FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0259145 through 18771 annotations produced 2 hits

CG13530 (CG42260):

Annotation Number : CG13530
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259145
Gbrowse : chr2R:18664061-18664820 (-) // 96.76 //
Probeset : 1625138_at
Accessions : protein= NP_001137739; /// NP_611715; /// NP_611717;, nucleotide= NM_001144267; /// NM_137871; /// NM_137873; /// NM_137873;
Interpro : 0005221 // intracellular cyclic nucleotide activated cation channel activity // inferred from sequence or structural sim
FlyMine data for FBgn0259145.
TRiP has 1 RNAi stocks for FBgn0259145 available for purchase.
VDRC has 7 RNAi stocks for FBgn0259145 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	21 ± 2	4 of 4	3.10	Up
Head	5 ± 0	0 of 4	0.80	None
Eye	2 ± 1	0 of 4	0.42	None
Thoracicoabdominal ganglion	23 ± 2	3 of 4	3.40	Up
Salivary gland	6 ± 2	0 of 4	0.94	None
Crop	6 ± 1	0 of 4	0.90	None
Midgut	7 ± 1	0 of 4	1.10	None
Tubule	1 ± 0	0 of 4	0.30	Down
Hindgut	6 ± 2	0 of 4	0.90	None
Heart	1 ± 0	0 of 4	0.21	Down
Fat body	9 ± 5	0 of 4	1.36	None
Ovary	5 ± 1	0 of 4	0.70	None
Testis	2 ± 0	0 of 4	0.30	Down
Male accessory glands	13 ± 1	0 of 4	1.90	Up
Virgin spermatheca	12 ± 1	0 of 4	1.73	Up
Mated spermatheca	15 ± 2	1 of 4	2.19	Up
Adult carcass	11 ± 3	1 of 4	1.70	None
Larval CNS	8 ± 1	0 of 4	1.29	None
Larval Salivary gland	2 ± 0	0 of 4	0.39	Down
Larval midgut	9 ± 1	1 of 4	1.36	None
Larval tubule	4 ± 1	0 of 4	0.60	None
Larval hindgut	6 ± 1	1 of 4	0.92	None
Larval fat body	6 ± 3	0 of 4	1.00	None
Larval trachea	6 ± 4	0 of 4	0.91	None
Larval carcass	10 ± 1	0 of 4	1.50	None
S2 cells (growing)	3 ± 1	0 of 4	0.55	None
Whole fly	6 ± 0	0 of 4

CG13530 (CG42260):

Annotation Number : CG3536
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259145
Gbrowse : chr2R:18630934-18648109 (-) // 100.0 //
Probeset : 1623394_at
Accessions : protein= NP_001137739; /// NP_611715; /// NP_611717;, nucleotide= NM_001144267; /// NM_137871; /// NM_137873; /// NM_137873;
Interpro : 0005221 // intracellular cyclic nucleotide activated cation channel activity // inferred from sequence or structural sim
FlyMine data for FBgn0259145.
Homophila reports that CG3536 is a close match (3e-24) to human gene HERG;KCNH2;LQT2;SQT1 (NP_742053), a gene associated with Long QT syndrome-2 (3);Short QT syndrome-1, 609620 (3);{Long QT syndrome, acquired, susceptibility to} (3).
BioGrid reports that CG3536 interacts with CG6866 .
TRiP has 1 RNAi stocks for FBgn0259145 available for purchase.
VDRC has 7 RNAi stocks for FBgn0259145 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	9 ± 0	0 of 4	11.50	None
Head	1 ± 0	0 of 4	1.80	None
Eye	4 ± 2	0 of 4	4.97	None
Thoracicoabdominal ganglion	7 ± 2	0 of 4	9.20	None
Salivary gland	6 ± 2	0 of 4	7.47	None
Crop	3 ± 1	0 of 4	4.40	None
Midgut	5 ± 1	0 of 4	6.60	Up
Tubule	3 ± 0	0 of 4	4.50	Up
Hindgut	1 ± 0	0 of 4	2.20	Up
Heart	5 ± 0	0 of 4	6.56	Up
Fat body	8 ± 6	0 of 4	9.94	None
Ovary	2 ± 1	0 of 4	2.90	None
Testis	3 ± 1	0 of 4	4.30	None
Male accessory glands	5 ± 2	0 of 4	6.80	None
Virgin spermatheca	5 ± 1	0 of 4	6.94	None
Mated spermatheca	5 ± 2	0 of 4	6.03	None
Adult carcass	4 ± 1	0 of 4	5.40	None
Larval CNS	4 ± 0	0 of 4	5.62	Up
Larval Salivary gland	7 ± 3	0 of 4	8.44	None
Larval midgut	6 ± 1	0 of 4	7.76	Up
Larval tubule	2 ± 0	0 of 4	2.30	None
Larval hindgut	3 ± 1	0 of 4	3.50	None
Larval fat body	10 ± 2	0 of 4	11.90	Up
Larval trachea	6 ± 1	0 of 4	7.85	Up
Larval carcass	7 ± 1	0 of 4	8.68	Up
S2 cells (growing)	2 ± 0	0 of 4	3.18	None
Whole fly	0 ± 0	0 of 4

Looking for FBgn0259145. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720