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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0259149 through 18771 annotations produced 2 hits



CG15768 (CG42264):

Annotation Number : CG15768
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259149
Gbrowse : chrX:5670135-5670786 (-) // 100.0 //
Probeset : 1628532_at
Accessions : protein= NP_572260;, nucleotide= NM_132032;
Interpro : 0004180 // carboxypeptidase activity // non-traceable author statement /// 0004180 // carboxypeptidase activity // infer
FlyMine data for FBgn0259149.
VDRC has 4 RNAi stocks for FBgn0259149 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 13 of 4 1.10None
Head5 10 of 4 0.70None
Eye2 00 of 4 0.31Down
Thoracicoabdominal ganglion9 22 of 4 1.20None
Salivary gland17 21 of 4 2.16Up
Crop8 13 of 4 1.00None
Midgut7 10 of 4 1.00None
Tubule8 02 of 4 1.00None
Hindgut6 12 of 4 0.90None
Heart3 01 of 4 0.43None
Fat body9 22 of 4 1.20None
Ovary4 00 of 4 0.60None
Testis5 01 of 4 0.60None
Male accessory glands11 41 of 4 1.40None
Virgin spermatheca6 11 of 4 0.77None
Mated spermatheca8 03 of 4 1.12None
Adult carcass13 31 of 4 1.70None
Larval CNS5 12 of 4 0.65None
Larval Salivary gland21 30 of 4 2.77Up
Larval midgut11 30 of 4 1.45None
Larval tubule5 10 of 4 0.70None
Larval hindgut6 02 of 4 0.86None
Larval fat body9 21 of 4 1.20None
Larval trachea5 21 of 4 0.69None
Larval carcass12 14 of 4 1.63Up
S2 cells (growing)5 10 of 4 0.69None
Whole fly7 10 of 4



CG15768 (CG42264):

Annotation Number : CG15769
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259149
Gbrowse : chrX:5667169-5668945 (-) // 100.0 //
Probeset : 1624708_at
Accessions : protein= NP_572260;, nucleotide= NM_132032;
Interpro : 0004180 // carboxypeptidase activity // non-traceable author statement /// 0004180 // carboxypeptidase activity // infer
FlyMine data for FBgn0259149.
VDRC has 4 RNAi stocks for FBgn0259149 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 11 of 4 0.90None
Head9 20 of 4 1.30None
Eye4 10 of 4 0.57None
Thoracicoabdominal ganglion4 10 of 4 0.60None
Salivary gland10 60 of 4 1.35None
Crop10 11 of 4 1.40None
Midgut14 10 of 4 1.90Up
Tubule9 00 of 4 1.30Up
Hindgut8 11 of 4 1.20None
Heart7 11 of 4 0.96None
Fat body13 30 of 4 1.74Up
Ovary7 00 of 4 1.00None
Testis3 00 of 4 0.40Down
Male accessory glands13 10 of 4 1.80Up
Virgin spermatheca8 10 of 4 1.17None
Mated spermatheca8 10 of 4 1.08None
Adult carcass12 00 of 4 1.70Up
Larval CNS5 30 of 4 0.70None
Larval Salivary gland9 11 of 4 1.29None
Larval midgut10 20 of 4 1.41None
Larval tubule8 21 of 4 1.10None
Larval hindgut8 12 of 4 1.15None
Larval fat body9 30 of 4 1.30None
Larval trachea7 40 of 4 0.95None
Larval carcass18 14 of 4 2.41Up
S2 cells (growing)8 11 of 4 1.06None
Whole fly7 10 of 4

Looking for FBgn0259149. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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