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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0259150 through 18771 annotations produced 3 hits



CG17758 (CG42265):

Annotation Number : CG17758
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259150
Gbrowse : chrX:5547550-5549760 (-) // 100.0 //
Probeset : 1627920_at
Accessions : protein= NP_001138160; /// NP_001138161;, nucleotide= NM_001144688; /// NM_001144689;
FlyMine data for FBgn0259150.
VDRC has 5 RNAi stocks for FBgn0259150 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain25 14 of 4 9.50Up
Head7 12 of 4 3.00Up
Eye5 03 of 4 1.93None
Thoracicoabdominal ganglion20 44 of 4 7.70Up
Salivary gland10 40 of 4 3.89None
Crop2 10 of 4 1.00None
Midgut3 00 of 4 1.40None
Tubule3 00 of 4 1.10None
Hindgut3 00 of 4 1.40None
Heart0 00 of 4 0.22None
Fat body3 40 of 4 1.32None
Ovary1 00 of 4 0.70None
Testis5 11 of 4 1.90None
Male accessory glands7 10 of 4 2.70None
Virgin spermatheca2 00 of 4 0.73None
Mated spermatheca6 10 of 4 2.26Up
Adult carcass7 20 of 4 2.80None
Larval CNS7 14 of 4 2.82Up
Larval Salivary gland5 10 of 4 1.89None
Larval midgut5 10 of 4 2.03None
Larval tubule1 00 of 4 0.60None
Larval hindgut6 00 of 4 2.30Up
Larval fat body3 10 of 4 1.30None
Larval trachea2 10 of 4 0.78None
Larval carcass5 11 of 4 1.91None
S2 cells (growing)2 10 of 4 1.04None
Whole fly2 01 of 4



CG17758 (CG42265):

Annotation Number : CG15776
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259150
Gbrowse : chrX:5554213-5556085 (-) // 100.0 //
Probeset : 1627918_at
Accessions : protein= NP_001138160; /// NP_001138161;, nucleotide= NM_001144688; /// NM_001144689;
FlyMine data for FBgn0259150.
VDRC has 5 RNAi stocks for FBgn0259150 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 10 of 4 1.20None
Head6 10 of 4 1.30None
Eye2 00 of 4 0.42None
Thoracicoabdominal ganglion6 10 of 4 1.30None
Salivary gland7 40 of 4 1.60None
Crop3 10 of 4 0.70None
Midgut10 10 of 4 2.10Up
Tubule3 10 of 4 0.70None
Hindgut4 10 of 4 0.90None
Heart2 10 of 4 0.62None
Fat body10 20 of 4 2.09Up
Ovary3 10 of 4 0.70None
Testis4 00 of 4 0.90None
Male accessory glands4 10 of 4 0.90None
Virgin spermatheca4 00 of 4 0.85None
Mated spermatheca5 10 of 4 1.03None
Adult carcass4 20 of 4 1.00None
Larval CNS3 00 of 4 0.74None
Larval Salivary gland2 00 of 4 0.52None
Larval midgut2 00 of 4 0.55None
Larval tubule2 10 of 4 0.50None
Larval hindgut2 00 of 4 0.59None
Larval fat body3 10 of 4 0.80None
Larval trachea5 40 of 4 1.06None
Larval carcass3 10 of 4 0.79None
S2 cells (growing)4 10 of 4 0.93None
Whole fly4 10 of 4



CG17758 (CG42265):

Annotation Number : CG15777
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259150
Gbrowse : chrX:5549880-5550720 (-) // 100.0 //
Probeset : 1623161_at
Accessions : protein= NP_001138160; /// NP_001138161;, nucleotide= NM_001144688; /// NM_001144689;
FlyMine data for FBgn0259150.
BioGrid reports that CG15777 interacts with CG17945 CG7399 .
VDRC has 5 RNAi stocks for FBgn0259150 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 10 of 4 4.90Up
Head2 00 of 4 1.40None
Eye4 10 of 4 3.00None
Thoracicoabdominal ganglion6 10 of 4 4.20Up
Salivary gland12 70 of 4 8.58None
Crop6 20 of 4 4.20None
Midgut12 30 of 4 8.20Up
Tubule3 00 of 4 2.00Up
Hindgut8 20 of 4 5.50None
Heart3 10 of 4 2.22None
Fat body7 20 of 4 4.78Up
Ovary1 00 of 4 1.00None
Testis4 10 of 4 3.20Up
Male accessory glands15 30 of 410.30Up
Virgin spermatheca3 10 of 4 2.49None
Mated spermatheca1 00 of 4 0.95None
Adult carcass2 00 of 4 1.70None
Larval CNS5 10 of 4 3.49Up
Larval Salivary gland10 10 of 4 6.75Up
Larval midgut14 10 of 4 9.51Up
Larval tubule3 00 of 4 2.00None
Larval hindgut5 10 of 4 3.47Up
Larval fat body5 10 of 4 3.70None
Larval trachea2 10 of 4 1.41None
Larval carcass3 10 of 4 2.27None
S2 cells (growing)3 10 of 4 2.32None
Whole fly1 00 of 4

Looking for FBgn0259150. 3 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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