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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0259151 through 18771 annotations produced 2 hits



CG31737 (CG42266):

Annotation Number : CG31737
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259151
Gbrowse : chr2L:16339336-16340390 (-) // 100.0 //
Probeset : 1634843_at
Accessions : protein= NP_001137827;, nucleotide= NM_001144355;
FlyMine data for FBgn0259151.
VDRC has 3 RNAi stocks for FBgn0259151 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.20Down
Head2 ± 10 of 4 0.20Down
Eye2 ± 00 of 4 0.20Down
Thoracicoabdominal ganglion3 ± 10 of 4 0.30Down
Salivary gland5 ± 10 of 4 0.55None
Crop5 ± 20 of 4 0.50None
Midgut6 ± 20 of 4 0.60None
Tubule4 ± 10 of 4 0.50Down
Hindgut4 ± 10 of 4 0.40Down
Heart4 ± 01 of 4 0.45Down
Fat body3 ± 20 of 4 0.37Down
Ovary4 ± 10 of 4 0.50Down
Testis75 ± 54 of 4 7.10Up
Male accessory glands8 ± 10 of 4 0.80None
Virgin spermatheca4 ± 10 of 4 0.41Down
Mated spermatheca5 ± 10 of 4 0.50None
Adult carcass2 ± 00 of 4 0.30Down
Larval CNS4 ± 20 of 4 0.43Down
Larval Salivary gland7 ± 10 of 4 0.67None
Larval midgut5 ± 20 of 4 0.48None
Larval tubule4 ± 20 of 4 0.40None
Larval hindgut2 ± 00 of 4 0.25Down
Larval fat body10 ± 31 of 4 0.90None
Larval trachea5 ± 20 of 4 0.47Down
Larval carcass6 ± 00 of 4 0.64None
S2 cells (growing)6 ± 10 of 4 0.61None
Whole fly10 ± 11 of 4



CG31737 (CG42266):

Annotation Number : CG31818
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259151
Gbrowse : chr2L:16338075-16338841 (-) // 100.0 //
Probeset : 1632740_at
Accessions : protein= NP_001137827;, nucleotide= NM_001144355;
FlyMine data for FBgn0259151.
VDRC has 3 RNAi stocks for FBgn0259151 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.10Down
Head1 ± 00 of 4 0.10Down
Eye0 ± 00 of 4 0.03Down
Thoracicoabdominal ganglion2 ± 00 of 4 0.10Down
Salivary gland5 ± 20 of 4 0.30Down
Crop1 ± 00 of 4 0.10Down
Midgut2 ± 10 of 4 0.10Down
Tubule1 ± 00 of 4 0.10Down
Hindgut1 ± 00 of 4 0.10Down
Heart1 ± 00 of 4 0.09Down
Fat body1 ± 00 of 4 0.06Down
Ovary0 ± 00 of 4 0.00Down
Testis348 ± 134 of 419.80Up
Male accessory glands0 ± 00 of 4 0.10Down
Virgin spermatheca0 ± 00 of 4 0.04Down
Mated spermatheca0 ± 00 of 4 0.05Down
Adult carcass0 ± 00 of 4 0.00Down
Larval CNS0 ± 00 of 4 0.04Down
Larval Salivary gland2 ± 00 of 4 0.11Down
Larval midgut1 ± 00 of 4 0.05Down
Larval tubule1 ± 00 of 4 0.10Down
Larval hindgut3 ± 10 of 4 0.20Down
Larval fat body17 ± 73 of 4 1.00None
Larval trachea2 ± 20 of 4 0.11Down
Larval carcass1 ± 00 of 4 0.06Down
S2 cells (growing)1 ± 00 of 4 0.07Down
Whole fly17 ± 24 of 4

Looking for FBgn0259151. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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