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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0259152 through 18771 annotations produced 1 hits



Caliban (Clbn):

Annotation Number : CG11847
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259152
Gbrowse : chr3R:20953532-20956767 (+) // 100.0 //
Probeset : 1623888_at
Accessions : protein= NP_001163721; /// NP_651341;, nucleotide= NM_001170250; /// NM_143084;
FlyMine data for FBgn0259152.
BioGrid reports that CG11847 interacts with CG5009 CG9326 .
VDRC has 2 RNAi stocks for FBgn0259152 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain184 ± 74 of 4 1.20Up
Head137 ± 44 of 4 0.90None
Eye170 ± 24 of 4 1.15None
Thoracicoabdominal ganglion176 ± 64 of 4 1.20Up
Salivary gland269 ± 44 of 4 1.82Up
Crop133 ± 54 of 4 0.90None
Midgut164 ± 124 of 4 1.10None
Tubule253 ± 214 of 4 1.70Up
Hindgut144 ± 14 of 4 1.00None
Heart128 ± 24 of 4 0.87None
Fat body114 ± 94 of 4 0.77Down
Ovary246 ± 154 of 4 1.70Up
Testis79 ± 34 of 4 0.50Down
Male accessory glands491 ± 104 of 4 3.30Up
Virgin spermatheca191 ± 44 of 4 1.29Up
Mated spermatheca238 ± 134 of 4 1.61Up
Adult carcass124 ± 64 of 4 0.80None
Larval CNS154 ± 34 of 4 1.04None
Larval Salivary gland294 ± 104 of 4 1.99Up
Larval midgut162 ± 74 of 4 1.10None
Larval tubule222 ± 114 of 4 1.50Up
Larval hindgut166 ± 104 of 4 1.12None
Larval fat body150 ± 84 of 4 1.00None
Larval trachea194 ± 204 of 4 1.31Up
Larval carcass190 ± 114 of 4 1.28Up
S2 cells (growing)273 ± 74 of 4 1.84Up
Whole fly148 ± 74 of 4

Looking for FBgn0259152. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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