FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0259162 through 18771 annotations produced 2 hits

CG15455 (RunxB):

Annotation Number : CG15455
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259162
Gbrowse : chrX:20411907-20424910 (+) // 100.0 //
Probeset : 1627618_at
Accessions : protein= NP_608398; /// NP_608399;, nucleotide= NM_134554; /// NM_134555; /// NM_134555;
Pathway : DNA-dependent // inferred from sequence or structural similarity /// 0006355 // regulation of transcription
Interpro : DNA-dependent // inferred from electronic annotation /// 0009987 // cellular process // inferred from mutant phenotype
FlyMine data for FBgn0259162.
Homophila reports that CG15455 is a close match (6e-49) to human gene AML3;CBFA1;PEBP2A1;RUNX2 (NP_004339), a gene associated with Cleidocranial dysplasia, 119600 (3);Dental anomalies, isolated (3).
BioGrid reports that CG15455 interacts with CG30122 .
VDRC has 3 RNAi stocks for FBgn0259162 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	3 ± 1	0 of 4	3.30	None
Head	1 ± 0	0 of 4	1.70	None
Eye	1 ± 0	0 of 4	1.32	None
Thoracicoabdominal ganglion	4 ± 0	0 of 4	3.90	Up
Salivary gland	7 ± 2	0 of 4	6.43	None
Crop	2 ± 1	0 of 4	2.70	None
Midgut	1 ± 0	0 of 4	1.70	None
Tubule	2 ± 0	0 of 4	2.20	Up
Hindgut	1 ± 0	0 of 4	1.60	None
Heart	2 ± 0	0 of 4	2.09	None
Fat body	2 ± 1	0 of 4	1.93	None
Ovary	1 ± 0	0 of 4	0.90	None
Testis	1 ± 0	0 of 4	1.50	None
Male accessory glands	3 ± 1	0 of 4	3.00	None
Virgin spermatheca	1 ± 0	0 of 4	1.70	None
Mated spermatheca	2 ± 1	0 of 4	2.48	None
Adult carcass	3 ± 1	0 of 4	3.20	None
Larval CNS	2 ± 2	0 of 4	2.25	None
Larval Salivary gland	6 ± 1	0 of 4	5.95	Up
Larval midgut	3 ± 2	0 of 4	2.70	None
Larval tubule	1 ± 0	0 of 4	1.10	None
Larval hindgut	1 ± 0	0 of 4	1.30	None
Larval fat body	3 ± 1	0 of 4	2.90	None
Larval trachea	3 ± 1	0 of 4	3.07	None
Larval carcass	1 ± 0	0 of 4	0.93	None
S2 cells (growing)	2 ± 1	0 of 4	1.84	None
Whole fly	1 ± 0	0 of 4

CG15455 (RunxB):

Annotation Number : CG15454
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259162
Gbrowse : chrX:20435797-20437040 (+) // 100.0 //
Probeset : 1632061_at
Accessions : protein= NP_608398; /// NP_608399;, nucleotide= NM_134554; /// NM_134555; /// NM_134555;
Pathway : DNA-dependent // inferred from sequence or structural similarity /// 0006355 // regulation of transcription
Interpro : DNA-dependent // inferred from electronic annotation /// 0009987 // cellular process // inferred from mutant phenotype
FlyMine data for FBgn0259162.
VDRC has 3 RNAi stocks for FBgn0259162 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	4 ± 0	0 of 4	1.20	None
Head	3 ± 1	0 of 4	1.00	None
Eye	2 ± 1	0 of 4	0.72	None
Thoracicoabdominal ganglion	2 ± 1	0 of 4	0.50	None
Salivary gland	2 ± 0	0 of 4	0.59	None
Crop	1 ± 0	0 of 4	0.30	None
Midgut	2 ± 1	0 of 4	0.60	None
Tubule	5 ± 1	0 of 4	1.30	None
Hindgut	0 ± 0	0 of 4	0.10	None
Heart	7 ± 1	1 of 4	1.83	None
Fat body	2 ± 2	0 of 4	0.69	None
Ovary	2 ± 1	0 of 4	0.50	None
Testis	1 ± 0	0 of 4	0.40	None
Male accessory glands	1 ± 1	0 of 4	0.40	None
Virgin spermatheca	3 ± 1	0 of 4	0.94	None
Mated spermatheca	0 ± 0	0 of 4	0.19	None
Adult carcass	4 ± 2	0 of 4	1.20	None
Larval CNS	2 ± 1	0 of 4	0.63	None
Larval Salivary gland	10 ± 1	0 of 4	2.70	Up
Larval midgut	1 ± 0	0 of 4	0.26	None
Larval tubule	8 ± 1	0 of 4	2.20	None
Larval hindgut	3 ± 0	0 of 4	0.75	None
Larval fat body	1 ± 0	0 of 4	0.40	None
Larval trachea	4 ± 2	0 of 4	1.18	None
Larval carcass	1 ± 0	0 of 4	0.47	None
S2 cells (growing)	1 ± 0	0 of 4	0.47	None
Whole fly	4 ± 1	0 of 4

Looking for FBgn0259162. 2 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720