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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0259163 through 18771 annotations produced 2 hits



CG32044 (CG42268):

Annotation Number : CG32046
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259163
Gbrowse : chr3L:9727111-9744676 (-) // 100.0 //
Probeset : 1633983_a_at
Accessions : protein= NP_729542; /// NP_729543; /// NP_729544;, nucleotide= NM_168366; /// NM_168367; /// NM_168368; /// NM_168368;
FlyMine data for FBgn0259163.
BioGrid reports that CG32046 interacts with CG33141 CG5450 CG6998 CG7417 .
VDRC has 3 RNAi stocks for FBgn0259163 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1123 ± 504 of 4 7.90Up
Head470 ± 314 of 4 3.30Up
Eye534 ± 314 of 4 3.76Up
Thoracicoabdominal ganglion924 ± 114 of 4 6.50Up
Salivary gland327 ± 124 of 4 2.30Up
Crop261 ± 84 of 4 1.80Up
Midgut275 ± 104 of 4 1.90Up
Tubule315 ± 224 of 4 2.20Up
Hindgut352 ± 64 of 4 2.50Up
Heart210 ± 114 of 4 1.48Up
Fat body373 ± 464 of 4 2.62Up
Ovary26 ± 14 of 4 0.20Down
Testis30 ± 24 of 4 0.20Down
Male accessory glands414 ± 144 of 4 2.90Up
Virgin spermatheca677 ± 754 of 4 4.76Up
Mated spermatheca641 ± 514 of 4 4.51Up
Adult carcass137 ± 74 of 4 1.00None
Larval CNS583 ± 684 of 4 4.10Up
Larval Salivary gland40 ± 64 of 4 0.29Down
Larval midgut177 ± 84 of 4 1.24None
Larval tubule193 ± 54 of 4 1.40Up
Larval hindgut295 ± 134 of 4 2.08Up
Larval fat body34 ± 34 of 4 0.20Down
Larval trachea152 ± 284 of 4 1.07None
Larval carcass55 ± 24 of 4 0.39Down
S2 cells (growing)6 ± 02 of 4 0.05Down
Whole fly142 ± 124 of 4



CG32044 (CG42268):

Annotation Number : CG32044
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259163
Gbrowse : chr3L:9745939-9747091 (-) // 100.0 //
Probeset : 1625529_at
Accessions : protein= NP_729542; /// NP_729543; /// NP_729544;, nucleotide= NM_168366; /// NM_168367; /// NM_168368; /// NM_168368;
FlyMine data for FBgn0259163.
VDRC has 3 RNAi stocks for FBgn0259163 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 10 of 4 0.40Down
Head8 ± 20 of 4 0.70None
Eye4 ± 10 of 4 0.38Down
Thoracicoabdominal ganglion8 ± 22 of 4 0.70None
Salivary gland18 ± 51 of 4 1.59None
Crop12 ± 14 of 4 1.00None
Midgut17 ± 04 of 4 1.50Up
Tubule9 ± 01 of 4 0.80Down
Hindgut14 ± 22 of 4 1.20None
Heart6 ± 12 of 4 0.54Down
Fat body9 ± 32 of 4 0.76None
Ovary6 ± 02 of 4 0.50Down
Testis6 ± 03 of 4 0.60None
Male accessory glands15 ± 21 of 4 1.30None
Virgin spermatheca8 ± 03 of 4 0.71None
Mated spermatheca7 ± 02 of 4 0.64None
Adult carcass10 ± 41 of 4 0.90None
Larval CNS6 ± 13 of 4 0.51Down
Larval Salivary gland7 ± 30 of 4 0.64None
Larval midgut8 ± 13 of 4 0.74None
Larval tubule9 ± 03 of 4 0.80None
Larval hindgut6 ± 11 of 4 0.57None
Larval fat body7 ± 10 of 4 0.70None
Larval trachea6 ± 14 of 4 0.59None
Larval carcass10 ± 10 of 4 0.89None
S2 cells (growing)6 ± 03 of 4 0.56None
Whole fly11 ± 13 of 4

Looking for FBgn0259163. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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