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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0259164 through 18771 annotations produced 2 hits



CG6596 (CG42269):

Annotation Number : CG6600
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259164
Gbrowse : chr3L:6062568-6064471 (+) // 100.0 //
Probeset : 1639720_at
Accessions : protein= NP_648018; /// NP_648019;, nucleotide= NM_139761; /// NM_139762; /// NM_139762;
Pathway : 0016021 // integral to membrane // inferred from electronic annotation
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0008513 // secondary active organic cation tr
FlyMine data for FBgn0259164.
Homophila reports that CG6600 is a close match (4e-14) to human gene OAT4L;SLC22A12;URAT1 (NP_700357), a gene associated with Hypouricemia, renal, 220150 (3).
VDRC has 5 RNAi stocks for FBgn0259164 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 0.20Down
Head17 24 of 4 1.40None
Eye4 00 of 4 0.34Down
Thoracicoabdominal ganglion5 20 of 4 0.40Down
Salivary gland12 30 of 4 1.00None
Crop5 10 of 4 0.40Down
Midgut4 20 of 4 0.40Down
Tubule4 10 of 4 0.40Down
Hindgut521 184 of 441.50Up
Heart8 12 of 4 0.64None
Fat body12 80 of 4 1.01None
Ovary4 10 of 4 0.30Down
Testis2 00 of 4 0.20Down
Male accessory glands17 60 of 4 1.40None
Virgin spermatheca3 10 of 4 0.26Down
Mated spermatheca10 00 of 4 0.82None
Adult carcass45 64 of 4 3.60Up
Larval CNS5 30 of 4 0.43Down
Larval Salivary gland7 30 of 4 0.57None
Larval midgut6 20 of 4 0.53None
Larval tubule4 10 of 4 0.30Down
Larval hindgut30 74 of 4 2.41None
Larval fat body3 10 of 4 0.30Down
Larval trachea15 73 of 4 1.24None
Larval carcass124 604 of 4 9.91None
S2 cells (growing)3 10 of 4 0.30Down
Whole fly12 03 of 4



CG6596 (CG42269):

Annotation Number : CG6596
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259164
Gbrowse : chr3L:6059594-6059993 (+) // 100.0 //
Probeset : 1627611_at
Accessions : protein= NP_648018; /// NP_648019;, nucleotide= NM_139761; /// NM_139762; /// NM_139762;
Pathway : 0016021 // integral to membrane // inferred from electronic annotation
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0008513 // secondary active organic cation tr
FlyMine data for FBgn0259164.
VDRC has 5 RNAi stocks for FBgn0259164 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 10 of 4 0.50None
Head6 00 of 4 0.80None
Eye3 10 of 4 0.41Down
Thoracicoabdominal ganglion6 01 of 4 0.80None
Salivary gland11 30 of 4 1.42None
Crop10 12 of 4 1.30None
Midgut7 21 of 4 0.90None
Tubule6 10 of 4 0.80None
Hindgut118 34 of 414.30Up
Heart4 21 of 4 0.53None
Fat body9 20 of 4 1.09None
Ovary5 11 of 4 0.70None
Testis4 00 of 4 0.60None
Male accessory glands15 12 of 4 1.90Up
Virgin spermatheca7 10 of 4 0.87None
Mated spermatheca9 11 of 4 1.09None
Adult carcass15 20 of 4 1.80Up
Larval CNS5 00 of 4 0.63None
Larval Salivary gland6 10 of 4 0.83None
Larval midgut3 10 of 4 0.38None
Larval tubule2 00 of 4 0.30Down
Larval hindgut10 11 of 4 1.25None
Larval fat body1 00 of 4 0.20Down
Larval trachea3 20 of 4 0.47Down
Larval carcass24 82 of 4 2.97None
S2 cells (growing)3 10 of 4 0.45Down
Whole fly8 12 of 4

Looking for FBgn0259164. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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