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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0259166 through 18771 annotations produced 2 hits



CG1846-RB ():

Annotation Number : CG1846
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : chrX:14126314-14128085 (-) // 100.0 //
Gbrowse : 4-bisphosphate 4-phosphatase))"
Probeset : 1641372_at
Accessions : protein= FBgn0259166, nucleotide= 2768892
GeneOntology : NM_206711 /; NM_206712
FlyMine data for chrX:14126314-14128085 (-) // 100.0 //.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain131 14 of 4 2.50Up
Head116 34 of 4 2.20Up
Eye239 154 of 4 4.45Up
Thoracicoabdominal ganglion181 104 of 4 3.40Up
Salivary gland72 94 of 4 1.34None
Crop80 24 of 4 1.50Up
Midgut49 44 of 4 0.90None
Tubule28 13 of 4 0.50Down
Hindgut31 24 of 4 0.60Down
Heart94 64 of 4 1.77Up
Fat body88 54 of 4 1.64Up
Ovary92 54 of 4 1.70Up
Testis65 44 of 4 1.20None
Male accessory glands133 64 of 4 2.50Up
Virgin spermatheca86 54 of 4 1.62Up
Mated spermatheca89 54 of 4 1.67Up
Adult carcass59 34 of 4 1.10None
Larval CNS84 54 of 4 1.57Up
Larval Salivary gland202 64 of 4 3.77Up
Larval midgut78 14 of 4 1.46Up
Larval tubule33 14 of 4 0.60Down
Larval hindgut31 14 of 4 0.59Down
Larval fat body164 124 of 4 3.10Up
Larval trachea90 114 of 4 1.68Up
Larval carcass62 54 of 4 1.16None
S2 cells (growing)176 64 of 4 3.28Up
Whole fly53 24 of 4



CG1846-RA ():

Annotation Number : CG1846
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : chrX:14122267-14128085 (-) // 100.0 //
Gbrowse : 4-bisphosphate 4-phosphatase))"
Probeset : 1632756_at
Accessions : protein= FBgn0259166, nucleotide= 2768892
GeneOntology : NM_206711 /; NM_206712
FlyMine data for chrX:14122267-14128085 (-) // 100.0 //.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain119 74 of 4 2.90Up
Head56 34 of 4 1.40Up
Eye69 14 of 4 1.68Up
Thoracicoabdominal ganglion114 74 of 4 2.80Up
Salivary gland66 43 of 4 1.61Up
Crop45 44 of 4 1.10None
Midgut27 12 of 4 0.70Down
Tubule33 04 of 4 0.80Down
Hindgut30 04 of 4 0.70Down
Heart22 24 of 4 0.55Down
Fat body36 41 of 4 0.89None
Ovary61 14 of 4 1.50Up
Testis21 24 of 4 0.50Down
Male accessory glands67 54 of 4 1.60Up
Virgin spermatheca31 24 of 4 0.76Down
Mated spermatheca32 33 of 4 0.78None
Adult carcass31 21 of 4 0.80Down
Larval CNS45 44 of 4 1.10None
Larval Salivary gland54 34 of 4 1.33Up
Larval midgut32 12 of 4 0.79Down
Larval tubule29 34 of 4 0.70Down
Larval hindgut35 14 of 4 0.86None
Larval fat body20 20 of 4 0.50Down
Larval trachea32 24 of 4 0.80Down
Larval carcass24 21 of 4 0.59Down
S2 cells (growing)43 34 of 4 1.05None
Whole fly41 14 of 4

Looking for FBgn0259166. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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