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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0259167 through 18771 annotations produced 2 hits



CG32415 (CG42272):

Annotation Number : CG32415
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259167
Gbrowse : chr3L:5796763-5798599 (+) // 100.0 //
Probeset : 1639959_at
Accessions : protein= NP_729101; /// NP_729102;, nucleotide= NM_168141; /// NM_168141; /// NM_168142;
FlyMine data for FBgn0259167.
VDRC has 3 RNAi stocks for FBgn0259167 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 01 of 4 1.10None
Head5 10 of 4 1.00None
Eye14 34 of 4 2.50None
Thoracicoabdominal ganglion5 11 of 4 0.90None
Salivary gland13 40 of 4 2.34None
Crop105 74 of 417.90Up
Midgut7 10 of 4 1.20None
Tubule15 12 of 4 2.60Up
Hindgut24 24 of 4 4.20Up
Heart1 00 of 4 0.29None
Fat body5 40 of 4 0.91None
Ovary3 10 of 4 0.50None
Testis7 01 of 4 1.30None
Male accessory glands9 11 of 4 1.50None
Virgin spermatheca4 10 of 4 0.68None
Mated spermatheca2 10 of 4 0.49None
Adult carcass13 30 of 4 2.30None
Larval CNS4 31 of 4 0.77None
Larval Salivary gland8 30 of 4 1.43None
Larval midgut4 10 of 4 0.68None
Larval tubule22 34 of 4 3.90Up
Larval hindgut32 24 of 4 5.54Up
Larval fat body4 10 of 4 0.70None
Larval trachea8 41 of 4 1.49None
Larval carcass11 22 of 4 1.92None
S2 cells (growing)7 01 of 4 1.21None
Whole fly5 20 of 4



CG32415 (CG42272):

Annotation Number : CG32416
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259167
Gbrowse : chr3L:5796240-5796555 (+) // 100.0 //
Probeset : 1636100_at
Accessions : protein= NP_729101; /// NP_729102;, nucleotide= NM_168141; /// NM_168141; /// NM_168142;
FlyMine data for FBgn0259167.
VDRC has 3 RNAi stocks for FBgn0259167 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 1.00None
Head1 00 of 4 1.50None
Eye0 00 of 4 1.05None
Thoracicoabdominal ganglion1 00 of 4 1.50None
Salivary gland3 10 of 4 4.24None
Crop19 32 of 420.60Up
Midgut3 10 of 4 3.60None
Tubule1 00 of 4 2.00None
Hindgut1 00 of 4 1.30None
Heart0 00 of 4 0.68None
Fat body1 00 of 4 1.97None
Ovary0 00 of 4 0.60None
Testis2 00 of 4 2.30None
Male accessory glands1 00 of 4 2.10None
Virgin spermatheca0 00 of 4 0.78None
Mated spermatheca0 00 of 4 0.84None
Adult carcass1 00 of 4 1.70None
Larval CNS1 10 of 4 1.73None
Larval Salivary gland1 00 of 4 1.65None
Larval midgut3 10 of 4 3.35None
Larval tubule3 10 of 4 3.70None
Larval hindgut5 10 of 4 6.41Up
Larval fat body1 00 of 4 1.60None
Larval trachea1 00 of 4 1.14None
Larval carcass1 00 of 4 1.59None
S2 cells (growing)1 00 of 4 1.62None
Whole fly0 00 of 4

Looking for FBgn0259167. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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