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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0259168 through 18771 annotations produced 4 hits



minibrain (mnb):

Annotation Number : CG7826
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259168
Gbrowse : chrX:17761304-17781240 (-) // 100.0 //
Probeset : 1630945_at
Accessions : protein= NP_001014750; /// NP_728104; /// NP_728106; /// NP_728107;, nucleotide= NM_001014750; /// NM_001014750; /// NM_167581; /// NM_167581; /// NM_170658; /// NM_170658; /// NM_170659;
Pathway : 0005634 // nucleus // inferred from electronic annotation
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // non-trace
FlyMine data for FBgn0259168.
Homophila reports that CG7826 is a close match (4e-14) to human gene AKT1 (NP_005154), a gene associated with Breast cancer, somatic, 114480 (3);Colorectal cancer, somatic, 114500 (3);Ovarian cancer, somatic, 604370 (3);{Schizophrenia, susceptibility to}, 181500 (2).
BioGrid reports that CG7826 interacts with CG9173 CG15676 CG3594 CG10694 CG11560 CG12835 CG4717 CG12723 CG8591 CG14228 CG5009 CG1962 CG8676 CG18476 CG31317 CG11206 CG6923 CG3629 CG14827 CG7948 CG15218 CG11963 CG14317 CG31811 CG31038 CG7281 CG17227 CG14619 CG3925 CG6488 CG30440 CG9984 CG4184 CG12432 CG33553 CG3938 CG4496 CG9108 CG11380 CG1765 CG6369 CG1244 CG9027 CG7922 CG14215 CG3920 CG32190 CG11759 CG33275 CG8181 .
TRiP has 4 RNAi stocks for FBgn0259168 available for purchase.
VDRC has 4 RNAi stocks for FBgn0259168 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain37 ± 54 of 4 2.50None
Head8 ± 14 of 4 0.60Down
Eye5 ± 03 of 4 0.34Down
Thoracicoabdominal ganglion14 ± 24 of 4 0.90None
Salivary gland7 ± 20 of 4 0.47None
Crop8 ± 04 of 4 0.50Down
Midgut3 ± 11 of 4 0.30Down
Tubule5 ± 01 of 4 0.30Down
Hindgut5 ± 13 of 4 0.40Down
Heart5 ± 12 of 4 0.39Down
Fat body13 ± 44 of 4 0.88None
Ovary66 ± 64 of 4 4.50Up
Testis4 ± 02 of 4 0.30Down
Male accessory glands8 ± 10 of 4 0.60Down
Virgin spermatheca6 ± 13 of 4 0.42Down
Mated spermatheca10 ± 04 of 4 0.68Down
Adult carcass7 ± 21 of 4 0.50None
Larval CNS41 ± 44 of 4 2.81Up
Larval Salivary gland4 ± 12 of 4 0.33Down
Larval midgut1 ± 10 of 4 0.13Down
Larval tubule7 ± 03 of 4 0.50Down
Larval hindgut4 ± 02 of 4 0.33Down
Larval fat body8 ± 22 of 4 0.50Down
Larval trachea5 ± 11 of 4 0.38Down
Larval carcass5 ± 04 of 4 0.37Down
S2 cells (growing)3 ± 01 of 4 0.22Down
Whole fly14 ± 04 of 4



minibrain (mnb):

Annotation Number : CG7835
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259168
Gbrowse : chrX:17768420-17769073 (-) // 100.0 //
Probeset : 1627370_at
Accessions : protein= NP_001014750; /// NP_728104; /// NP_728106; /// NP_728107;, nucleotide= NM_001014750; /// NM_001014750; /// NM_167581; /// NM_167581; /// NM_170658; /// NM_170658; /// NM_170659;
Pathway : 0005634 // nucleus // inferred from electronic annotation
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // non-trace
FlyMine data for FBgn0259168.
BioGrid reports that CG7835 interacts with CG7864 CG7954 CG9572 .
TRiP has 4 RNAi stocks for FBgn0259168 available for purchase.
VDRC has 4 RNAi stocks for FBgn0259168 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain11 ± 20 of 4 0.90None
Head11 ± 10 of 4 0.90None
Eye6 ± 11 of 4 0.50Down
Thoracicoabdominal ganglion5 ± 00 of 4 0.50Down
Salivary gland14 ± 20 of 4 1.15None
Crop6 ± 20 of 4 0.50None
Midgut23 ± 22 of 4 1.90Up
Tubule10 ± 10 of 4 0.90None
Hindgut12 ± 31 of 4 1.00None
Heart5 ± 10 of 4 0.48Down
Fat body14 ± 51 of 4 1.14None
Ovary6 ± 00 of 4 0.50Down
Testis6 ± 10 of 4 0.50None
Male accessory glands6 ± 10 of 4 0.50None
Virgin spermatheca9 ± 00 of 4 0.77None
Mated spermatheca14 ± 10 of 4 1.14None
Adult carcass16 ± 10 of 4 1.40None
Larval CNS7 ± 10 of 4 0.63None
Larval Salivary gland8 ± 10 of 4 0.72None
Larval midgut12 ± 30 of 4 0.97None
Larval tubule11 ± 00 of 4 0.90None
Larval hindgut13 ± 21 of 4 1.05None
Larval fat body11 ± 10 of 4 0.90None
Larval trachea9 ± 50 of 4 0.75None
Larval carcass16 ± 20 of 4 1.33None
S2 cells (growing)11 ± 00 of 4 0.94None
Whole fly12 ± 21 of 4



minibrain (mnb):

Annotation Number : LD34846
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259168
Gbrowse : chrX:17771744-17781212 (-) // 100.0 //
Probeset : 1638476_s_at
Accessions : protein= NP_001014750; /// NP_728104; /// NP_728106; /// NP_728107;, nucleotide= NM_001014750; /// NM_001014750; /// NM_167581; /// NM_167581; /// NM_170658; /// NM_170658; /// NM_170659;
Pathway : 0005634 // nucleus // inferred from electronic annotation
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // non-trace
FlyMine data for FBgn0259168.
TRiP has 4 RNAi stocks for FBgn0259168 available for purchase.
VDRC has 4 RNAi stocks for FBgn0259168 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain137 ± 64 of 4 2.30Up
Head44 ± 74 of 4 0.70None
Eye118 ± 34 of 4 1.95Up
Thoracicoabdominal ganglion113 ± 114 of 4 1.90Up
Salivary gland24 ± 72 of 4 0.40Down
Crop127 ± 84 of 4 2.10Up
Midgut59 ± 44 of 4 1.00None
Tubule123 ± 124 of 4 2.00Up
Hindgut90 ± 34 of 4 1.50Up
Heart93 ± 114 of 4 1.54None
Fat body78 ± 164 of 4 1.30None
Ovary164 ± 74 of 4 2.70Up
Testis44 ± 44 of 4 0.70Down
Male accessory glands51 ± 34 of 4 0.80None
Virgin spermatheca146 ± 64 of 4 2.42Up
Mated spermatheca127 ± 144 of 4 2.11Up
Adult carcass58 ± 203 of 4 1.00None
Larval CNS180 ± 384 of 4 2.98Up
Larval Salivary gland32 ± 54 of 4 0.54Down
Larval midgut45 ± 44 of 4 0.75Down
Larval tubule157 ± 144 of 4 2.60Up
Larval hindgut80 ± 64 of 4 1.33Up
Larval fat body90 ± 114 of 4 1.50None
Larval trachea84 ± 154 of 4 1.40Up
Larval carcass72 ± 194 of 4 1.19None
S2 cells (growing)30 ± 24 of 4 0.50Down
Whole fly60 ± 24 of 4



minibrain (mnb):

Annotation Number : CG7826
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259168
Gbrowse : chrX:17756722-17781240 (-) // 99.91 //
Probeset : 1632380_at
Accessions : protein= NP_001014750; /// NP_728104; /// NP_728106; /// NP_728107;, nucleotide= NM_001014750; /// NM_001014750; /// NM_167581; /// NM_167581; /// NM_170658; /// NM_170658; /// NM_170659;
Pathway : 0005634 // nucleus // inferred from electronic annotation
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // non-trace
FlyMine data for FBgn0259168.
Homophila reports that CG7826 is a close match (4e-14) to human gene AKT1 (NP_005154), a gene associated with Breast cancer, somatic, 114480 (3);Colorectal cancer, somatic, 114500 (3);Ovarian cancer, somatic, 604370 (3);{Schizophrenia, susceptibility to}, 181500 (2).
BioGrid reports that CG7826 interacts with CG9173 CG15676 CG3594 CG10694 CG11560 CG12835 CG4717 CG12723 CG8591 CG14228 CG5009 CG1962 CG8676 CG18476 CG31317 CG11206 CG6923 CG3629 CG14827 CG7948 CG15218 CG11963 CG14317 CG31811 CG31038 CG7281 CG17227 CG14619 CG3925 CG6488 CG30440 CG9984 CG4184 CG12432 CG33553 CG3938 CG4496 CG9108 CG11380 CG1765 CG6369 CG1244 CG9027 CG7922 CG14215 CG3920 CG32190 CG11759 CG33275 CG8181 .
TRiP has 4 RNAi stocks for FBgn0259168 available for purchase.
VDRC has 4 RNAi stocks for FBgn0259168 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain88 ± 14 of 4 1.00None
Head91 ± 84 of 4 1.00None
Eye78 ± 44 of 4 0.86None
Thoracicoabdominal ganglion81 ± 44 of 4 0.90None
Salivary gland153 ± 44 of 4 1.69Up
Crop210 ± 54 of 4 2.30Up
Midgut123 ± 34 of 4 1.40Up
Tubule107 ± 44 of 4 1.20Up
Hindgut154 ± 64 of 4 1.70Up
Heart134 ± 94 of 4 1.48Up
Fat body145 ± 244 of 4 1.61Up
Ovary114 ± 34 of 4 1.30None
Testis41 ± 14 of 4 0.50Down
Male accessory glands118 ± 74 of 4 1.30Up
Virgin spermatheca92 ± 24 of 4 1.02None
Mated spermatheca112 ± 104 of 4 1.24None
Adult carcass138 ± 34 of 4 1.50Up
Larval CNS169 ± 254 of 4 1.86Up
Larval Salivary gland67 ± 44 of 4 0.74None
Larval midgut153 ± 244 of 4 1.69None
Larval tubule269 ± 94 of 4 3.00Up
Larval hindgut211 ± 174 of 4 2.33Up
Larval fat body199 ± 184 of 4 2.20Up
Larval trachea145 ± 94 of 4 1.61Up
Larval carcass290 ± 734 of 4 3.20None
S2 cells (growing)203 ± 34 of 4 2.24Up
Whole fly90 ± 84 of 4

Looking for FBgn0259168. 4 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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