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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0259170 through 18771 annotations produced 2 hits



alpha Mannosidase I (alpha-Man-I):

Annotation Number : CG32684
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259170
Gbrowse : chrX:10170481-10219990 (-) // 100.0 //
Probeset : 1629744_a_at
Accessions : protein= NP_511105; /// NP_727407; /// NP_727408; /// NP_996395; /// NP_996396; /// NP_996397; /// NP_996398; /// NP_996399;, nucleotide= NM_078550; /// NM_167223; /// NM_167224; /// NM_167224; /// NM_206672; /// NM_206673; /// NM_206674; /// NM_206675; /// NM_206676;
Pathway : 0000139 // Golgi membrane // non-traceable author statement /// 0000139 // Golgi membrane // inferred from electronic an
Interpro : "0004571 // mannosyl-oligosaccharide 1
FlyMine data for FBgn0259170.
VDRC has 5 RNAi stocks for FBgn0259170 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain317 ± 94 of 4 3.10Up
Head124 ± 94 of 4 1.20None
Eye116 ± 124 of 4 1.12None
Thoracicoabdominal ganglion172 ± 74 of 4 1.70Up
Salivary gland87 ± 54 of 4 0.84None
Crop46 ± 14 of 4 0.40Down
Midgut48 ± 34 of 4 0.50Down
Tubule19 ± 23 of 4 0.20Down
Hindgut95 ± 44 of 4 0.90None
Heart44 ± 34 of 4 0.43Down
Fat body95 ± 124 of 4 0.92None
Ovary319 ± 94 of 4 3.10Up
Testis21 ± 14 of 4 0.20Down
Male accessory glands259 ± 394 of 4 2.50Up
Virgin spermatheca45 ± 34 of 4 0.44Down
Mated spermatheca54 ± 34 of 4 0.53Down
Adult carcass59 ± 14 of 4 0.60Down
Larval CNS160 ± 224 of 4 1.55Up
Larval Salivary gland126 ± 64 of 4 1.21Up
Larval midgut38 ± 14 of 4 0.37Down
Larval tubule26 ± 24 of 4 0.30Down
Larval hindgut81 ± 54 of 4 0.79Down
Larval fat body52 ± 54 of 4 0.50Down
Larval trachea57 ± 114 of 4 0.55Down
Larval carcass82 ± 64 of 4 0.80Down
S2 cells (growing)221 ± 54 of 4 2.14Up
Whole fly103 ± 44 of 4



alpha Mannosidase I (alpha-Man-I):

Annotation Number : CG32682
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259170
Gbrowse : chrX:10201865-10202594 (-) // 100.0 //
Probeset : 1629120_at
Accessions : protein= NP_511105; /// NP_727407; /// NP_727408; /// NP_996395; /// NP_996396; /// NP_996397; /// NP_996398; /// NP_996399;, nucleotide= NM_078550; /// NM_167223; /// NM_167224; /// NM_167224; /// NM_206672; /// NM_206673; /// NM_206674; /// NM_206675; /// NM_206676;
Pathway : 0000139 // Golgi membrane // non-traceable author statement /// 0000139 // Golgi membrane // inferred from electronic an
Interpro : "0004571 // mannosyl-oligosaccharide 1
FlyMine data for FBgn0259170.
VDRC has 5 RNAi stocks for FBgn0259170 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain16 ± 14 of 4 1.30None
Head36 ± 04 of 4 3.00Up
Eye18 ± 34 of 4 1.51None
Thoracicoabdominal ganglion7 ± 12 of 4 0.60Down
Salivary gland6 ± 20 of 4 0.49None
Crop16 ± 14 of 4 1.30None
Midgut2 ± 10 of 4 0.20Down
Tubule9 ± 21 of 4 0.80None
Hindgut92 ± 34 of 4 7.50Up
Heart8 ± 13 of 4 0.66None
Fat body3 ± 30 of 4 0.24Down
Ovary5 ± 11 of 4 0.50Down
Testis21 ± 04 of 4 1.70Up
Male accessory glands5 ± 10 of 4 0.40Down
Virgin spermatheca15 ± 14 of 4 1.28None
Mated spermatheca22 ± 24 of 4 1.87Up
Adult carcass46 ± 44 of 4 3.80Up
Larval CNS1 ± 10 of 4 0.12Down
Larval Salivary gland2 ± 00 of 4 0.21Down
Larval midgut1 ± 00 of 4 0.13Down
Larval tubule2 ± 10 of 4 0.20Down
Larval hindgut7 ± 12 of 4 0.63Down
Larval fat body9 ± 10 of 4 0.70None
Larval trachea10 ± 32 of 4 0.82None
Larval carcass13 ± 03 of 4 1.09None
S2 cells (growing)4 ± 00 of 4 0.34Down
Whole fly12 ± 03 of 4

Looking for FBgn0259170. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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