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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0259171 through 18771 annotations produced 2 hits



Phosphodiesterase 9 (Pde9):

Annotation Number : CG3754
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259171
Gbrowse : chrX:12723734-12725669 (-) // 100.0 //
Probeset : 1626165_at
Accessions : protein= NP_572834; /// NP_727644;, nucleotide= NM_132606; /// NM_132606; /// NM_167340;
Interpro : "0003824 // catalytic activity // inferred from electronic annotation /// 0004114 // 3'
FlyMine data for FBgn0259171.
BioGrid reports that CG3754 interacts with CG5711 CG7386 .
TRiP has 1 RNAi stocks for FBgn0259171 available for purchase.
VDRC has 5 RNAi stocks for FBgn0259171 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain72 54 of 4 8.90Up
Head36 24 of 4 4.60Up
Eye53 34 of 4 6.55Up
Thoracicoabdominal ganglion105 34 of 413.00Up
Salivary gland24 22 of 4 2.96Up
Crop23 23 of 4 2.90Up
Midgut5 20 of 4 0.60None
Tubule16 11 of 4 2.00Up
Hindgut6 10 of 4 0.80None
Heart50 34 of 4 6.21Up
Fat body41 44 of 4 5.15Up
Ovary3 10 of 4 0.40Down
Testis15 14 of 4 1.80Up
Male accessory glands12 10 of 4 1.60None
Virgin spermatheca58 14 of 4 7.17Up
Mated spermatheca32 64 of 4 4.00Up
Adult carcass31 43 of 4 3.90Up
Larval CNS19 34 of 4 2.43Up
Larval Salivary gland34 44 of 4 4.21Up
Larval midgut19 20 of 4 2.40Up
Larval tubule31 34 of 4 3.80Up
Larval hindgut15 04 of 4 1.89Up
Larval fat body36 23 of 4 4.50Up
Larval trachea43 74 of 4 5.35Up
Larval carcass8 20 of 4 0.99None
S2 cells (growing)29 14 of 4 3.67Up
Whole fly8 10 of 4



Phosphodiesterase 9 (Pde9):

Annotation Number : CG32648
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259171
Gbrowse : chrX:12685496-12706568 (-) // 100.0 //
Probeset : 1641322_at
Accessions : protein= NP_572834; /// NP_727644;, nucleotide= NM_132606; /// NM_132606; /// NM_167340;
Interpro : "0003824 // catalytic activity // inferred from electronic annotation /// 0004114 // 3'
FlyMine data for FBgn0259171.
Homophila reports that CG32648 is a close match (1e-25) to human gene PDE6A;PDEA (NP_000431), a gene associated with Retinitis pigmentosa, autosomal recessive (3).
BioGrid reports that CG32648 interacts with CG5676 .
TRiP has 1 RNAi stocks for FBgn0259171 available for purchase.
VDRC has 5 RNAi stocks for FBgn0259171 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain86 24 of 4 9.00Up
Head19 23 of 4 2.00Up
Eye14 14 of 4 1.52None
Thoracicoabdominal ganglion46 24 of 4 4.90Up
Salivary gland23 32 of 4 2.41Up
Crop13 12 of 4 1.50None
Midgut28 10 of 4 3.00Up
Tubule8 00 of 4 0.80None
Hindgut17 21 of 4 1.80None
Heart15 23 of 4 1.62None
Fat body30 34 of 4 3.20Up
Ovary7 10 of 4 0.80None
Testis16 14 of 4 1.70None
Male accessory glands12 31 of 4 1.30None
Virgin spermatheca11 00 of 4 1.18None
Mated spermatheca7 10 of 4 0.80None
Adult carcass28 51 of 4 2.90Up
Larval CNS30 74 of 4 3.16Up
Larval Salivary gland31 32 of 4 3.30Up
Larval midgut21 30 of 4 2.30Up
Larval tubule26 24 of 4 2.80Up
Larval hindgut20 14 of 4 2.19Up
Larval fat body41 44 of 4 4.40Up
Larval trachea4 20 of 4 0.48None
Larval carcass16 20 of 4 1.76None
S2 cells (growing)33 34 of 4 3.49Up
Whole fly9 23 of 4

Looking for FBgn0259171. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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