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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0259174 through 18771 annotations produced 2 hits



Nedd4 (Nedd4):

Annotation Number : CG7555
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259174
Gbrowse : chr3L:17523182-17539760 (+) // 100.0 //
Probeset : 1637582_a_at
Accessions : protein= NP_001137964; /// NP_001137965; /// NP_648993; /// NP_730282; /// NP_730283; /// NP_730284; /// NP_996116;, nucleotide= NM_001144492; /// NM_001144493; /// NM_140736; /// NM_168736; /// NM_168737; /// NM_168738; /// NM_168738; /// NM_206394;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /
Interpro : 0004842 // ubiquitin-protein ligase activity // inferred from sequence or structural similarity /// 0004842 // ubiquitin
FlyMine data for FBgn0259174.
Homophila reports that CG7555 is a close match (9e-11) to human gene FOR;WWOX (NP_570607), a gene associated with Esophageal squamous cell carcinoma, 133239 (3).
BioGrid reports that CG7555 interacts with CG8355 CG13521 CG17943 CG17943 .
TRiP has 2 RNAi stocks for FBgn0259174 available for purchase.
VDRC has 2 RNAi stocks for FBgn0259174 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain208 234 of 4 2.50Up
Head174 74 of 4 2.10Up
Eye199 174 of 4 2.43Up
Thoracicoabdominal ganglion200 104 of 4 2.40Up
Salivary gland275 194 of 4 3.35Up
Crop177 54 of 4 2.20Up
Midgut106 24 of 4 1.30None
Tubule165 64 of 4 2.00Up
Hindgut192 54 of 4 2.30Up
Heart46 24 of 4 0.57Down
Fat body86 74 of 4 1.05None
Ovary69 24 of 4 0.80None
Testis11 14 of 4 0.10Down
Male accessory glands129 24 of 4 1.60Up
Virgin spermatheca150 34 of 4 1.83Up
Mated spermatheca155 124 of 4 1.89Up
Adult carcass81 34 of 4 1.00None
Larval CNS205 264 of 4 2.50Up
Larval Salivary gland167 134 of 4 2.03Up
Larval midgut158 74 of 4 1.93Up
Larval tubule210 54 of 4 2.60Up
Larval hindgut173 84 of 4 2.11Up
Larval fat body51 54 of 4 0.60Down
Larval trachea70 114 of 4 0.85None
Larval carcass66 24 of 4 0.81None
S2 cells (growing)109 44 of 4 1.34Up
Whole fly82 84 of 4



Nedd4 (Nedd4):

Annotation Number : CG32184
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259174
Gbrowse : chr3L:17534715-17535196 (+) // 100.0 //
Probeset : 1638288_at
Accessions : protein= NP_001137964; /// NP_001137965; /// NP_648993; /// NP_730282; /// NP_730283; /// NP_730284; /// NP_996116;, nucleotide= NM_001144492; /// NM_001144493; /// NM_140736; /// NM_168736; /// NM_168737; /// NM_168738; /// NM_168738; /// NM_206394;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /
Interpro : 0004842 // ubiquitin-protein ligase activity // inferred from sequence or structural similarity /// 0004842 // ubiquitin
FlyMine data for FBgn0259174.
TRiP has 2 RNAi stocks for FBgn0259174 available for purchase.
VDRC has 2 RNAi stocks for FBgn0259174 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.40None
Head6 10 of 4 4.20None
Eye4 10 of 4 3.31None
Thoracicoabdominal ganglion2 10 of 4 1.40None
Salivary gland3 20 of 4 2.59None
Crop1 10 of 4 1.30None
Midgut4 10 of 4 3.30None
Tubule2 00 of 4 1.60None
Hindgut2 10 of 4 1.70None
Heart2 00 of 4 1.95None
Fat body4 20 of 4 3.36None
Ovary0 00 of 4 0.40None
Testis1 00 of 4 1.10None
Male accessory glands5 10 of 4 3.50None
Virgin spermatheca7 10 of 4 4.90Up
Mated spermatheca2 10 of 4 1.66None
Adult carcass3 10 of 4 2.10None
Larval CNS1 10 of 4 0.88None
Larval Salivary gland2 10 of 4 1.60None
Larval midgut2 00 of 4 1.95None
Larval tubule1 00 of 4 1.20None
Larval hindgut2 01 of 4 1.41None
Larval fat body3 20 of 4 2.40None
Larval trachea2 10 of 4 1.52None
Larval carcass1 00 of 4 1.16None
S2 cells (growing)1 00 of 4 1.24None
Whole fly1 00 of 4

Looking for FBgn0259174. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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