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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0259175 through 18771 annotations produced 2 hits



omega (ome):

Annotation Number : CG32143
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259175
Gbrowse : chr3L:14673476-14674193 (+) // 100.0 //
Probeset : 1633832_a_at
Accessions : protein= NP_001097606; /// NP_001137955; /// NP_524739;, nucleotide= NM_001104136; /// NM_001144483; /// NM_080000;
Pathway : 0016020 // membrane // inferred from electronic annotation
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0008236 // serine-type peptidase activity // inferr
FlyMine data for FBgn0259175.
VDRC has 5 RNAi stocks for FBgn0259175 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.40None
Head2 ± 10 of 4 1.50None
Eye3 ± 10 of 4 2.01None
Thoracicoabdominal ganglion1 ± 00 of 4 1.10None
Salivary gland70 ± 154 of 440.58Up
Crop19 ± 24 of 411.00Up
Midgut3 ± 10 of 4 2.00None
Tubule13 ± 12 of 4 7.80Up
Hindgut26 ± 24 of 415.30Up
Heart3 ± 10 of 4 1.99None
Fat body3 ± 20 of 4 2.03None
Ovary0 ± 00 of 4 0.20None
Testis2 ± 10 of 4 1.60None
Male accessory glands2 ± 00 of 4 1.10None
Virgin spermatheca1 ± 10 of 4 1.04None
Mated spermatheca1 ± 00 of 4 0.99None
Adult carcass5 ± 10 of 4 3.10None
Larval CNS0 ± 00 of 4 0.23None
Larval Salivary gland70 ± 174 of 441.07Up
Larval midgut1 ± 00 of 4 0.65None
Larval tubule70 ± 44 of 440.80Up
Larval hindgut16 ± 23 of 4 9.51Up
Larval fat body3 ± 20 of 4 1.90None
Larval trachea2 ± 30 of 4 1.42None
Larval carcass0 ± 00 of 4 0.49None
S2 cells (growing)1 ± 00 of 4 0.87None
Whole fly1 ± 00 of 4



omega (ome):

Annotation Number : CG32145
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259175
Gbrowse : chr3L:14699853-14740232 (+) // 99.58 //
Probeset : 1640918_at
Accessions : protein= NP_001097606; /// NP_001137955; /// NP_524739;, nucleotide= NM_001104136; /// NM_001144483; /// NM_080000;
Pathway : 0016020 // membrane // inferred from electronic annotation
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0008236 // serine-type peptidase activity // inferr
FlyMine data for FBgn0259175.
BioGrid reports that CG32145 interacts with CG4432 CG9169 CG8609 .
VDRC has 5 RNAi stocks for FBgn0259175 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain228 ± 54 of 4 1.80Up
Head130 ± 74 of 4 1.00None
Eye78 ± 44 of 4 0.62Down
Thoracicoabdominal ganglion139 ± 94 of 4 1.10None
Salivary gland816 ± 1444 of 4 6.46Up
Crop158 ± 84 of 4 1.30Up
Midgut919 ± 364 of 4 7.30Up
Tubule401 ± 614 of 4 3.20Up
Hindgut481 ± 284 of 4 3.80Up
Heart95 ± 54 of 4 0.75Down
Fat body40 ± 54 of 4 0.32Down
Ovary16 ± 14 of 4 0.10Down
Testis32 ± 34 of 4 0.30Down
Male accessory glands56 ± 44 of 4 0.40Down
Virgin spermatheca84 ± 44 of 4 0.67Down
Mated spermatheca79 ± 34 of 4 0.63Down
Adult carcass85 ± 104 of 4 0.70Down
Larval CNS58 ± 104 of 4 0.46Down
Larval Salivary gland675 ± 284 of 4 5.35Up
Larval midgut827 ± 574 of 4 6.55Up
Larval tubule468 ± 284 of 4 3.70Up
Larval hindgut505 ± 514 of 4 4.00Up
Larval fat body26 ± 34 of 4 0.20Down
Larval trachea786 ± 704 of 4 6.22Up
Larval carcass169 ± 04 of 4 1.34Up
S2 cells (growing)37 ± 34 of 4 0.30Down
Whole fly126 ± 54 of 4

Looking for FBgn0259175. 2 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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