FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0259176 through 18771 annotations produced 2 hits

bunched (bun):

Annotation Number : CG5461
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259176
Gbrowse : chr2L:12457130-12461237 (-) // 100.0 //
Probeset : 1623436_a_at
Accessions : protein= NP_001036357; /// NP_001036358; /// NP_001036359; /// NP_001162964; /// NP_001162965; /// NP_525103; /// NP_723755; /// NP_723756;, nucleotide= NM_001042892; /// NM_001042893; /// NM_001042894; /// NM_001169493; /// NM_001169494; /// NM_080364; /// NM_165012; /// NM_165013;
Pathway : DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred fr
Interpro : 0005634 // nucleus // non-traceable author statement /// 0005634 // nucleus // inferred from electronic annotation /// 0
FlyMine data for FBgn0259176.
BioGrid reports that CG5461 interacts with CG5700 CG8942 CG3166 CG3340 CG3978 CG4385 CG4637 .
TRiP has 1 RNAi stocks for FBgn0259176 available for purchase.
VDRC has 3 RNAi stocks for FBgn0259176 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	534 ± 35	4 of 4	2.70	Up
Head	211 ± 14	4 of 4	1.10	None
Eye	616 ± 16	4 of 4	3.09	Up
Thoracicoabdominal ganglion	502 ± 20	4 of 4	2.50	Up
Salivary gland	789 ± 137	4 of 4	3.96	Up
Crop	363 ± 13	4 of 4	1.80	Up
Midgut	278 ± 8	4 of 4	1.40	Up
Tubule	292 ± 56	4 of 4	1.50	None
Hindgut	404 ± 18	4 of 4	2.00	Up
Heart	378 ± 30	4 of 4	1.90	Up
Fat body	187 ± 30	4 of 4	0.94	None
Ovary	373 ± 14	4 of 4	1.90	Up
Testis	97 ± 7	4 of 4	0.50	Down
Male accessory glands	155 ± 14	4 of 4	0.80	None
Virgin spermatheca	213 ± 8	4 of 4	1.07	None
Mated spermatheca	160 ± 9	4 of 4	0.80	None
Adult carcass	162 ± 24	4 of 4	0.80	None
Larval CNS	270 ± 44	4 of 4	1.36	Up
Larval Salivary gland	188 ± 12	4 of 4	0.94	None
Larval midgut	170 ± 4	4 of 4	0.86	None
Larval tubule	416 ± 16	4 of 4	2.10	Up
Larval hindgut	260 ± 20	4 of 4	1.31	None
Larval fat body	226 ± 5	4 of 4	1.10	None
Larval trachea	587 ± 47	4 of 4	2.94	Up
Larval carcass	203 ± 23	4 of 4	1.02	None
S2 cells (growing)	277 ± 3	4 of 4	1.39	Up
Whole fly	199 ± 14	4 of 4

bunched (bun):

Annotation Number : CG31857
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259176
Gbrowse : chr2L:12516437-12517100 (-) // 100.0 //
Probeset : 1631003_at
Accessions : protein= NP_001036357; /// NP_001036358; /// NP_001036359; /// NP_001162964; /// NP_001162965; /// NP_525103; /// NP_723755; /// NP_723756;, nucleotide= NM_001042892; /// NM_001042893; /// NM_001042894; /// NM_001169493; /// NM_001169494; /// NM_080364; /// NM_165012; /// NM_165013;
Pathway : DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred fr
Interpro : 0005634 // nucleus // non-traceable author statement /// 0005634 // nucleus // inferred from electronic annotation /// 0
FlyMine data for FBgn0259176.
TRiP has 1 RNAi stocks for FBgn0259176 available for purchase.
VDRC has 3 RNAi stocks for FBgn0259176 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	34 ± 1	4 of 4	6.90	Up
Head	6 ± 3	0 of 4	1.30	None
Eye	6 ± 2	2 of 4	1.36	None
Thoracicoabdominal ganglion	31 ± 5	4 of 4	6.40	Up
Salivary gland	6 ± 1	0 of 4	1.39	None
Crop	22 ± 2	4 of 4	4.60	Up
Midgut	13 ± 1	1 of 4	2.70	Up
Tubule	5 ± 0	0 of 4	1.00	None
Hindgut	14 ± 0	2 of 4	2.90	Up
Heart	3 ± 1	0 of 4	0.61	None
Fat body	6 ± 3	0 of 4	1.31	None
Ovary	2 ± 0	0 of 4	0.60	None
Testis	5 ± 1	1 of 4	1.10	None
Male accessory glands	8 ± 1	1 of 4	1.70	None
Virgin spermatheca	4 ± 1	0 of 4	0.80	None
Mated spermatheca	3 ± 0	0 of 4	0.67	None
Adult carcass	9 ± 2	0 of 4	2.00	None
Larval CNS	11 ± 1	4 of 4	2.28	Up
Larval Salivary gland	6 ± 2	0 of 4	1.36	None
Larval midgut	5 ± 1	0 of 4	1.04	None
Larval tubule	9 ± 2	1 of 4	1.80	None
Larval hindgut	5 ± 1	0 of 4	1.16	None
Larval fat body	10 ± 2	1 of 4	2.20	None
Larval trachea	3 ± 0	0 of 4	0.77	None
Larval carcass	5 ± 1	0 of 4	1.20	None
S2 cells (growing)	7 ± 0	0 of 4	1.53	None
Whole fly	5 ± 0	0 of 4

Looking for FBgn0259176. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720