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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0259179 through 18771 annotations produced 2 hits



CG30264 (CG42284):

Annotation Number : CG30266
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259179
Gbrowse : chr2R:18710650-18712431 (+) // 100.0 //
Probeset : 1640011_at
Accessions : protein= NP_611720;, nucleotide= NM_137876;
FlyMine data for FBgn0259179.
VDRC has 2 RNAi stocks for FBgn0259179 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 10 of 4 1.70None
Head6 10 of 4 3.00None
Eye0 00 of 4 0.29None
Thoracicoabdominal ganglion2 10 of 4 1.10None
Salivary gland0 00 of 4 0.41None
Crop2 10 of 4 0.90None
Midgut5 11 of 4 2.30None
Tubule3 00 of 4 1.40Up
Hindgut1 00 of 4 0.50None
Heart2 10 of 4 1.08None
Fat body1 10 of 4 0.83None
Ovary1 00 of 4 0.40None
Testis1 00 of 4 0.60None
Male accessory glands4 10 of 4 2.00None
Virgin spermatheca1 00 of 4 0.69None
Mated spermatheca2 20 of 4 1.23None
Adult carcass2 10 of 4 1.10None
Larval CNS0 00 of 4 0.40None
Larval Salivary gland3 10 of 4 1.41None
Larval midgut5 00 of 4 2.48None
Larval tubule6 10 of 4 2.70None
Larval hindgut2 10 of 4 1.26None
Larval fat body8 21 of 4 3.50None
Larval trachea0 00 of 4 0.24None
Larval carcass2 00 of 4 0.89None
S2 cells (growing)2 00 of 4 1.11None
Whole fly2 10 of 4



CG30264 (CG42284):

Annotation Number : CG30264
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259179
Gbrowse : chr2R:18714768-18716368 (+) // 100.0 //
Probeset : 1629174_at
Accessions : protein= NP_611720;, nucleotide= NM_137876;
FlyMine data for FBgn0259179.
VDRC has 2 RNAi stocks for FBgn0259179 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain17 10 of 4 1.90Up
Head56 44 of 4 6.40Up
Eye17 23 of 4 2.03Up
Thoracicoabdominal ganglion17 10 of 4 2.00Up
Salivary gland8 20 of 4 0.97None
Crop8 20 of 4 0.90None
Midgut10 30 of 4 1.10None
Tubule3 00 of 4 0.30Down
Hindgut6 20 of 4 0.70None
Heart8 00 of 4 0.92None
Fat body12 30 of 4 1.45None
Ovary3 00 of 4 0.40Down
Testis5 10 of 4 0.60None
Male accessory glands3 20 of 4 0.40None
Virgin spermatheca222 84 of 425.19Up
Mated spermatheca180 414 of 420.45Up
Adult carcass10 40 of 4 1.20None
Larval CNS6 00 of 4 0.76None
Larval Salivary gland42 41 of 4 4.75Up
Larval midgut8 20 of 4 0.97None
Larval tubule1 00 of 4 0.20Down
Larval hindgut3 10 of 4 0.40Down
Larval fat body9 40 of 4 1.00None
Larval trachea4 00 of 4 0.52Down
Larval carcass5 10 of 4 0.57None
S2 cells (growing)5 00 of 4 0.58Down
Whole fly8 10 of 4

Looking for FBgn0259179. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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