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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0259195 through 18771 annotations produced 1 hits


/// (CG42299 /// CG42300):

Annotation Number : CG32584
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259195 /// FBgn0259196
Gbrowse : chrUextra:13519238-13519846 (-) // 99.62 // /// chrX:15469088-15469696 (-) // 99.62 // /// chrX:15449394-15450008 (-) // 99.25 //
Probeset : 1624718_a_at
Accessions : protein= NP_727866;, nucleotide= NM_167452;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0259195 /// FBgn0259196.
BioGrid reports that CG32584 interacts with CG32809 CG4087 CG6459 CG8065 CG8310 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 00 of 4 0.20Down
Head2 ± 00 of 4 0.10Down
Eye2 ± 00 of 4 0.14Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.10Down
Salivary gland6 ± 20 of 4 0.36Down
Crop2 ± 00 of 4 0.10Down
Midgut1 ± 00 of 4 0.10Down
Tubule2 ± 00 of 4 0.10Down
Hindgut1 ± 00 of 4 0.10Down
Heart0 ± 00 of 4 0.03Down
Fat body1 ± 00 of 4 0.06Down
Ovary1 ± 00 of 4 0.10Down
Testis201 ± 94 of 410.70Up
Male accessory glands4 ± 10 of 4 0.20Down
Virgin spermatheca2 ± 10 of 4 0.12Down
Mated spermatheca3 ± 10 of 4 0.16Down
Adult carcass3 ± 10 of 4 0.20Down
Larval CNS5 ± 10 of 4 0.29Down
Larval Salivary gland2 ± 00 of 4 0.13Down
Larval midgut2 ± 00 of 4 0.15Down
Larval tubule2 ± 10 of 4 0.10Down
Larval hindgut2 ± 10 of 4 0.12Down
Larval fat body58 ± 221 of 4 3.10None
Larval trachea4 ± 20 of 4 0.23Down
Larval carcass4 ± 20 of 4 0.22Down
S2 cells (growing)8 ± 10 of 4 0.44Down
Whole fly18 ± 10 of 4

Looking for FBgn0259195. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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