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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0259199 through 18771 annotations produced 1 hits



/// (CG42303 /// CG42304):

Annotation Number : CG32297
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259199 /// FBgn0259200
Gbrowse : chr3L:2652133-2655455 (+) // 100.0 //
Probeset : 1632358_at
Accessions : protein= NP_001137877; /// NP_728769;, nucleotide= NM_001144405; /// NM_167963;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0259199 /// FBgn0259200.
BioGrid reports that CG32297 interacts with CG3428 CG32635 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain67 ± 24 of 4 5.70Up
Head24 ± 14 of 4 2.00Up
Eye18 ± 24 of 4 1.59None
Thoracicoabdominal ganglion53 ± 34 of 4 4.50Up
Salivary gland2 ± 10 of 4 0.24Down
Crop9 ± 20 of 4 0.80None
Midgut10 ± 10 of 4 0.90None
Tubule6 ± 00 of 4 0.50Down
Hindgut10 ± 10 of 4 0.90None
Heart5 ± 10 of 4 0.47Down
Fat body3 ± 30 of 4 0.29Down
Ovary11 ± 10 of 4 1.00None
Testis27 ± 14 of 4 2.30Up
Male accessory glands15 ± 00 of 4 1.30None
Virgin spermatheca5 ± 20 of 4 0.47None
Mated spermatheca9 ± 10 of 4 0.76None
Adult carcass10 ± 20 of 4 0.90None
Larval CNS64 ± 114 of 4 5.45Up
Larval Salivary gland7 ± 10 of 4 0.59None
Larval midgut8 ± 30 of 4 0.73None
Larval tubule7 ± 10 of 4 0.60None
Larval hindgut9 ± 10 of 4 0.78None
Larval fat body8 ± 31 of 4 0.70None
Larval trachea19 ± 34 of 4 1.63Up
Larval carcass8 ± 10 of 4 0.70None
S2 cells (growing)24 ± 11 of 4 2.03Up
Whole fly11 ± 11 of 4

Looking for FBgn0259199. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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