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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0259209 through 18771 annotations produced 3 hits


Muscle-specific LIM protein at 60A (Mlp60A):

Annotation Number : CG30179
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259209
Gbrowse : chr2R:19964580-19965231 (+) // 100.0 //
Probeset : 1626709_at
Accessions : protein= NP_001137750; /// NP_788435;, nucleotide= NM_001144278; /// NM_176255;
Pathway : 0005634 // nucleus // non-traceable author statement /// 0005634 // nucleus // traceable author statement /// 0005634 //
Interpro : 0005515 // protein binding // traceable author statement /// 0008270 // zinc ion binding // inferred from electronic ann
FlyMine data for FBgn0259209.
Homophila reports that CG30179 is a close match (1e-25) to human gene CLP;CMD1M;CMH12;CRP3;CSRP3 (NP_003467), a gene associated with Cardiomyopathy, dilated, 1M, 607482 (3);Cardiomyopathy, familial hypertrophic, 12, 612124 (3).
TRiP has 1 RNAi stocks for FBgn0259209 available for purchase.
VDRC has 6 RNAi stocks for FBgn0259209 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head13 ± 42 of 4 0.40Down
Eye0 ± 00 of 4 0.02Down
Thoracicoabdominal ganglion3 ± 10 of 4 0.10Down
Salivary gland5 ± 20 of 4 0.17Down
Crop95 ± 64 of 4 2.80Up
Midgut23 ± 10 of 4 0.70None
Tubule1 ± 00 of 4 0.00Down
Hindgut22 ± 00 of 4 0.60None
Heart14 ± 12 of 4 0.43Down
Fat body1 ± 00 of 4 0.04Down
Ovary1 ± 00 of 4 0.00Down
Testis6 ± 10 of 4 0.20Down
Male accessory glands7 ± 30 of 4 0.20Down
Virgin spermatheca1 ± 00 of 4 0.05Down
Mated spermatheca2 ± 00 of 4 0.08Down
Adult carcass176 ± 44 of 4 5.10Up
Larval CNS0 ± 00 of 4 0.02Down
Larval Salivary gland3 ± 10 of 4 0.09Down
Larval midgut9 ± 20 of 4 0.28Down
Larval tubule1 ± 00 of 4 0.00Down
Larval hindgut2 ± 10 of 4 0.08Down
Larval fat body2 ± 00 of 4 0.10Down
Larval trachea1 ± 00 of 4 0.04Down
Larval carcass7 ± 10 of 4 0.23Down
S2 cells (growing)0 ± 00 of 4 0.03Down
Whole fly34 ± 53 of 4


Muscle-specific LIM protein at 60A (Mlp60A):

Annotation Number : CG30174
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259209
Gbrowse : chr2R:19963703-19964477 (+) // 100.0 //
Probeset : 1629885_at
Accessions : protein= NP_001137750; /// NP_788435;, nucleotide= NM_001144278; /// NM_176255;
Pathway : 0005634 // nucleus // non-traceable author statement /// 0005634 // nucleus // traceable author statement /// 0005634 //
Interpro : 0005515 // protein binding // traceable author statement /// 0008270 // zinc ion binding // inferred from electronic ann
FlyMine data for FBgn0259209.
Homophila reports that CG30174 is a close match (4e-23) to human gene CLP;CMD1M;CMH12;CRP3;CSRP3 (NP_003467), a gene associated with Cardiomyopathy, dilated, 1M, 607482 (3);Cardiomyopathy, familial hypertrophic, 12, 612124 (3).
TRiP has 1 RNAi stocks for FBgn0259209 available for purchase.
VDRC has 6 RNAi stocks for FBgn0259209 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 00 of 4 0.10Down
Head12 ± 03 of 4 0.50None
Eye1 ± 00 of 4 0.07Down
Thoracicoabdominal ganglion4 ± 00 of 4 0.20None
Salivary gland10 ± 30 of 4 0.46None
Crop63 ± 54 of 4 2.70Up
Midgut9 ± 20 of 4 0.40None
Tubule2 ± 00 of 4 0.10Down
Hindgut16 ± 24 of 4 0.70None
Heart5 ± 10 of 4 0.24None
Fat body5 ± 30 of 4 0.22Down
Ovary1 ± 00 of 4 0.10Down
Testis3 ± 00 of 4 0.10Down
Male accessory glands5 ± 21 of 4 0.20Down
Virgin spermatheca3 ± 10 of 4 0.17Down
Mated spermatheca2 ± 10 of 4 0.11Down
Adult carcass88 ± 54 of 4 3.80Up
Larval CNS2 ± 00 of 4 0.11Down
Larval Salivary gland6 ± 00 of 4 0.26None
Larval midgut1 ± 00 of 4 0.06Down
Larval tubule2 ± 00 of 4 0.10Down
Larval hindgut2 ± 01 of 4 0.10Down
Larval fat body2 ± 00 of 4 0.10Down
Larval trachea1 ± 20 of 4 0.08Down
Larval carcass7 ± 00 of 4 0.32None
S2 cells (growing)1 ± 00 of 4 0.05Down
Whole fly23 ± 54 of 4


Muscle-specific LIM protein at 60A (Mlp60A):

Annotation Number : CG33149
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259209
Gbrowse : chr2R:19962535-19963216 (+) // 100.0 //
Probeset : 1638818_at
Accessions : protein= NP_001137750; /// NP_788435;, nucleotide= NM_001144278; /// NM_176255;
Pathway : 0005634 // nucleus // non-traceable author statement /// 0005634 // nucleus // traceable author statement /// 0005634 //
Interpro : 0005515 // protein binding // traceable author statement /// 0008270 // zinc ion binding // inferred from electronic ann
FlyMine data for FBgn0259209.
Homophila reports that CG33149 is a close match (8e-15) to human gene CLP;CMD1M;CMH12;CRP3;CSRP3 (NP_003467), a gene associated with Cardiomyopathy, dilated, 1M, 607482 (3);Cardiomyopathy, familial hypertrophic, 12, 612124 (3).
TRiP has 1 RNAi stocks for FBgn0259209 available for purchase.
VDRC has 6 RNAi stocks for FBgn0259209 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain44 ± 24 of 4 0.00Down
Head1758 ± 1394 of 4 1.20None
Eye215 ± 584 of 4 0.14Down
Thoracicoabdominal ganglion61 ± 124 of 4 0.00Down
Salivary gland41 ± 83 of 4 0.03Down
Crop5546 ± 3624 of 4 3.70Up
Midgut1647 ± 694 of 4 1.10None
Tubule54 ± 24 of 4 0.00Down
Hindgut3662 ± 674 of 4 2.40Up
Heart2975 ± 2554 of 4 1.97Up
Fat body284 ± 974 of 4 0.19Down
Ovary103 ± 134 of 4 0.10Down
Testis261 ± 74 of 4 0.20Down
Male accessory glands1563 ± 354 of 4 1.00None
Virgin spermatheca95 ± 174 of 4 0.06Down
Mated spermatheca265 ± 284 of 4 0.18Down
Adult carcass3796 ± 2734 of 4 2.50Up
Larval CNS23 ± 64 of 4 0.02Down
Larval Salivary gland34 ± 34 of 4 0.02Down
Larval midgut1854 ± 584 of 4 1.23Up
Larval tubule141 ± 174 of 4 0.10Down
Larval hindgut3934 ± 524 of 4 2.60Up
Larval fat body16 ± 41 of 4 0.00Down
Larval trachea759 ± 4524 of 4 0.50Down
Larval carcass4963 ± 4354 of 4 3.28Up
S2 cells (growing)3 ± 00 of 4 0.00Down
Whole fly1511 ± 894 of 4

Looking for FBgn0259209. 3 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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