FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0259211 through 18771 annotations produced 2 hits

grainyhead (grh):

Annotation Number : CG30111
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259211
Gbrowse : chr2R:13701849-13705229 (+) // 100.0 //
Probeset : 1635106_at
Accessions : protein= NP_476842; /// NP_476843; /// NP_476844; /// NP_476845; /// NP_725723; /// NP_725725; /// NP_725726;, nucleotide= NM_057494; /// NM_057495; /// NM_057496; /// NM_057497; /// NM_166250; /// NM_166250; /// NM_166252; /// NM_166253;
Pathway : open tracheal system // inferred from mutant phenotype /// 0007428 // primary branching
Interpro : open tracheal system // traceable author statement /// 0008360 // regulation of cell shape // inferred from mutant phen
FlyMine data for FBgn0259211.
TRiP has 2 RNAi stocks for FBgn0259211 available for purchase.
VDRC has 4 RNAi stocks for FBgn0259211 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	3 ± 1	0 of 4	0.70	None
Head	3 ± 1	0 of 4	0.70	None
Eye	6 ± 1	0 of 4	1.17	None
Thoracicoabdominal ganglion	2 ± 0	0 of 4	0.40	None
Salivary gland	9 ± 3	0 of 4	1.82	None
Crop	14 ± 2	1 of 4	2.70	Up
Midgut	2 ± 1	0 of 4	0.50	None
Tubule	2 ± 0	0 of 4	0.50	Down
Hindgut	8 ± 2	1 of 4	1.50	None
Heart	3 ± 0	0 of 4	0.59	None
Fat body	8 ± 4	0 of 4	1.49	None
Ovary	5 ± 1	0 of 4	1.00	None
Testis	0 ± 0	0 of 4	0.20	Down
Male accessory glands	4 ± 1	0 of 4	0.70	None
Virgin spermatheca	7 ± 0	0 of 4	1.42	None
Mated spermatheca	4 ± 1	0 of 4	0.80	None
Adult carcass	5 ± 1	0 of 4	1.00	None
Larval CNS	8 ± 1	2 of 4	1.49	None
Larval Salivary gland	3 ± 1	0 of 4	0.59	None
Larval midgut	1 ± 0	0 of 4	0.26	None
Larval tubule	4 ± 0	0 of 4	0.80	None
Larval hindgut	5 ± 2	0 of 4	1.09	None
Larval fat body	7 ± 1	0 of 4	1.40	None
Larval trachea	19 ± 5	4 of 4	3.63	Up
Larval carcass	17 ± 0	0 of 4	3.26	Up
S2 cells (growing)	2 ± 0	0 of 4	0.52	None
Whole fly	5 ± 1	0 of 4

grainyhead (grh):

Annotation Number : CG5058
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259211
Gbrowse : chr2R:13690293-13729118 (+) // 100.0 //
Probeset : 1634573_a_at
Accessions : protein= NP_476842; /// NP_476843; /// NP_476844; /// NP_476845; /// NP_725723; /// NP_725725; /// NP_725726;, nucleotide= NM_057494; /// NM_057495; /// NM_057496; /// NM_057497; /// NM_166250; /// NM_166250; /// NM_166252; /// NM_166253;
Pathway : open tracheal system // inferred from mutant phenotype /// 0007428 // primary branching
Interpro : open tracheal system // traceable author statement /// 0008360 // regulation of cell shape // inferred from mutant phen
FlyMine data for FBgn0259211.
Homophila reports that CG5058 is a close match (2e-50) to human gene TFCP2L3;DFNA28 (NP_079191), a gene associated with Deafness, autosomal dominant 28, 608641 (3).
BioGrid reports that CG5058 interacts with CG4608 .
TRiP has 2 RNAi stocks for FBgn0259211 available for purchase.
VDRC has 4 RNAi stocks for FBgn0259211 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	4 ± 0	0 of 4	0.10	Down
Head	104 ± 4	4 of 4	2.00	Up
Eye	385 ± 27	4 of 4	7.34	Up
Thoracicoabdominal ganglion	5 ± 2	0 of 4	0.10	Down
Salivary gland	14 ± 5	1 of 4	0.27	Down
Crop	211 ± 1	4 of 4	4.00	Up
Midgut	2 ± 1	0 of 4	0.10	Down
Tubule	5 ± 0	0 of 4	0.10	Down
Hindgut	69 ± 3	4 of 4	1.30	None
Heart	36 ± 4	4 of 4	0.69	None
Fat body	27 ± 9	4 of 4	0.53	Down
Ovary	1 ± 0	0 of 4	0.00	Down
Testis	18 ± 2	4 of 4	0.40	Down
Male accessory glands	7 ± 2	0 of 4	0.10	Down
Virgin spermatheca	19 ± 2	3 of 4	0.38	Down
Mated spermatheca	35 ± 6	3 of 4	0.68	None
Adult carcass	134 ± 20	4 of 4	2.60	Up
Larval CNS	250 ± 23	4 of 4	4.78	Up
Larval Salivary gland	12 ± 2	1 of 4	0.23	Down
Larval midgut	5 ± 0	0 of 4	0.10	Down
Larval tubule	4 ± 1	0 of 4	0.10	Down
Larval hindgut	95 ± 17	4 of 4	1.83	None
Larval fat body	5 ± 3	0 of 4	0.10	Down
Larval trachea	469 ± 44	4 of 4	8.95	Up
Larval carcass	567 ± 80	4 of 4	10.81	Up
S2 cells (growing)	58 ± 3	4 of 4	1.11	None
Whole fly	52 ± 7	4 of 4

Looking for FBgn0259211. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720