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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0259212 through 18771 annotations produced 2 hits



canoe (cno):

Annotation Number : CG31537
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259212
Gbrowse : chr3R:1004445-1006410 (-) // 100.0 //
Probeset : 1633156_at
Accessions : protein= NP_524232; /// NP_730891; /// NP_730892;, nucleotide= NM_079508; /// NM_169025; /// NM_169026; /// NM_169026;
Pathway : elongation of leading edge cells // non-traceable author statement /// 0016318 // ommatidial rotation // inferred from
Interpro : 0005912 // adherens junction // inferred from direct assay /// 0005912 // adherens junction // non-traceable author stat
FlyMine data for FBgn0259212.
TRiP has 2 RNAi stocks for FBgn0259212 available for purchase.
VDRC has 2 RNAi stocks for FBgn0259212 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 00 of 4 3.70Up
Head2 10 of 4 2.30None
Eye0 00 of 4 1.06None
Thoracicoabdominal ganglion4 10 of 4 5.60Up
Salivary gland7 20 of 4 8.71None
Crop4 10 of 4 5.70None
Midgut2 00 of 4 2.40None
Tubule5 00 of 4 6.80Up
Hindgut4 01 of 4 5.60Up
Heart2 00 of 4 2.56None
Fat body1 10 of 4 1.97None
Ovary2 00 of 4 3.00None
Testis1 00 of 4 1.70None
Male accessory glands5 10 of 4 5.90None
Virgin spermatheca2 10 of 4 2.97None
Mated spermatheca1 00 of 4 1.32None
Adult carcass2 00 of 4 2.40None
Larval CNS1 10 of 4 1.85None
Larval Salivary gland7 21 of 4 8.53None
Larval midgut1 00 of 4 1.53None
Larval tubule6 21 of 4 7.10None
Larval hindgut1 00 of 4 2.03None
Larval fat body3 00 of 4 4.50Up
Larval trachea1 00 of 4 1.29None
Larval carcass3 00 of 4 3.97None
S2 cells (growing)3 10 of 4 3.97None
Whole fly0 00 of 4



canoe (cno):

Annotation Number : CG2534
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259212
Gbrowse : chr3R:999319-1043147 (-) // 100.0 //
Probeset : 1632618_a_at
Accessions : protein= NP_524232; /// NP_730891; /// NP_730892;, nucleotide= NM_079508; /// NM_169025; /// NM_169026; /// NM_169026;
Pathway : elongation of leading edge cells // non-traceable author statement /// 0016318 // ommatidial rotation // inferred from
Interpro : 0005912 // adherens junction // inferred from direct assay /// 0005912 // adherens junction // non-traceable author stat
FlyMine data for FBgn0259212.
BioGrid reports that CG2534 interacts with CG5680 CG5460 CG3936 CG1167 CG9375 .
TRiP has 2 RNAi stocks for FBgn0259212 available for purchase.
VDRC has 2 RNAi stocks for FBgn0259212 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain50 24 of 4 0.60Down
Head41 44 of 4 0.50Down
Eye43 34 of 4 0.52Down
Thoracicoabdominal ganglion27 34 of 4 0.30Down
Salivary gland94 114 of 4 1.16None
Crop49 64 of 4 0.60Down
Midgut21 14 of 4 0.30Down
Tubule26 14 of 4 0.30Down
Hindgut24 14 of 4 0.30Down
Heart150 124 of 4 1.84Up
Fat body15 53 of 4 0.19Down
Ovary339 84 of 4 4.10Up
Testis36 24 of 4 0.40Down
Male accessory glands38 34 of 4 0.50Down
Virgin spermatheca12 22 of 4 0.15Down
Mated spermatheca15 13 of 4 0.19Down
Adult carcass38 34 of 4 0.50Down
Larval CNS41 24 of 4 0.51Down
Larval Salivary gland46 44 of 4 0.57Down
Larval midgut23 63 of 4 0.29Down
Larval tubule41 54 of 4 0.50Down
Larval hindgut27 34 of 4 0.33Down
Larval fat body33 34 of 4 0.40Down
Larval trachea48 54 of 4 0.59Down
Larval carcass29 14 of 4 0.36Down
S2 cells (growing)67 24 of 4 0.82Down
Whole fly81 44 of 4

Looking for FBgn0259212. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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