FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0259213 through 18771 annotations produced 5 hits

CG33515 (CG42313):

Annotation Number : Stencil:2L:14901837:14893466:GENSCAN
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259213
Gbrowse : chr2L:14915382-14923753 (-) // 100.0 //
Probeset : 1627397_at
Accessions : protein= NP_001014485;, nucleotide= NM_001014485;
Pathway : 0016020 // membrane // inferred from electronic annotation
FlyMine data for FBgn0259213.
VDRC has 7 RNAi stocks for FBgn0259213 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	16 ± 1	4 of 4	10.60	Up
Head	2 ± 1	0 of 4	1.70	None
Eye	1 ± 1	0 of 4	1.03	None
Thoracicoabdominal ganglion	12 ± 2	2 of 4	8.20	Up
Salivary gland	2 ± 0	0 of 4	1.50	None
Crop	0 ± 0	0 of 4	0.60	None
Midgut	0 ± 0	0 of 4	0.50	None
Tubule	1 ± 0	0 of 4	0.80	None
Hindgut	2 ± 1	0 of 4	1.30	None
Heart	2 ± 1	0 of 4	1.71	None
Fat body	1 ± 0	0 of 4	0.76	None
Ovary	0 ± 0	0 of 4	0.30	None
Testis	0 ± 0	0 of 4	0.40	None
Male accessory glands	2 ± 1	0 of 4	1.80	None
Virgin spermatheca	1 ± 0	0 of 4	1.03	None
Mated spermatheca	2 ± 1	0 of 4	1.71	None
Adult carcass	4 ± 2	0 of 4	2.90	None
Larval CNS	6 ± 1	0 of 4	4.24	Up
Larval Salivary gland	1 ± 0	0 of 4	0.84	None
Larval midgut	1 ± 0	0 of 4	0.79	None
Larval tubule	0 ± 0	0 of 4	0.50	None
Larval hindgut	1 ± 0	0 of 4	1.13	None
Larval fat body	3 ± 1	0 of 4	1.90	None
Larval trachea	1 ± 2	0 of 4	1.27	None
Larval carcass	0 ± 0	0 of 4	0.55	None
S2 cells (growing)	0 ± 0	0 of 4	0.42	None
Whole fly	1 ± 1	0 of 4

CG33515 (CG42313):

Annotation Number : HDC02590
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259213
Gbrowse : chr2L:14921115-14924204 (-) // 100.0 //
Probeset : 1641732_at
Accessions : protein= NP_001014485;, nucleotide= NM_001014485;
Pathway : 0016020 // membrane // inferred from electronic annotation
FlyMine data for FBgn0259213.
VDRC has 7 RNAi stocks for FBgn0259213 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	9 ± 1	0 of 4	1.20	None
Head	6 ± 1	0 of 4	0.90	None
Eye	4 ± 1	0 of 4	0.58	None
Thoracicoabdominal ganglion	10 ± 3	1 of 4	1.40	None
Salivary gland	20 ± 7	0 of 4	2.80	None
Crop	17 ± 2	0 of 4	2.30	Up
Midgut	4 ± 1	0 of 4	0.60	None
Tubule	5 ± 0	0 of 4	0.70	Down
Hindgut	10 ± 2	0 of 4	1.40	None
Heart	4 ± 0	0 of 4	0.66	None
Fat body	9 ± 4	0 of 4	1.23	None
Ovary	5 ± 2	0 of 4	0.80	None
Testis	10 ± 2	1 of 4	1.40	None
Male accessory glands	6 ± 2	0 of 4	0.90	None
Virgin spermatheca	7 ± 0	0 of 4	0.99	None
Mated spermatheca	4 ± 1	0 of 4	0.56	None
Adult carcass	11 ± 2	0 of 4	1.50	None
Larval CNS	3 ± 3	0 of 4	0.48	None
Larval Salivary gland	8 ± 2	0 of 4	1.07	None
Larval midgut	5 ± 1	0 of 4	0.71	None
Larval tubule	5 ± 1	0 of 4	0.70	None
Larval hindgut	4 ± 1	0 of 4	0.65	None
Larval fat body	7 ± 2	0 of 4	1.00	None
Larval trachea	2 ± 2	0 of 4	0.39	None
Larval carcass	10 ± 0	0 of 4	1.38	None
S2 cells (growing)	10 ± 1	0 of 4	1.36	None
Whole fly	7 ± 1	0 of 4

CG33515 (CG42313):

Annotation Number : CG15277
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259213
Gbrowse : chr2L:14908520-14909767 (-) // 100.0 //
Probeset : 1636542_at
Accessions : protein= NP_001014485;, nucleotide= NM_001014485;
Pathway : 0016020 // membrane // inferred from electronic annotation
FlyMine data for FBgn0259213.
VDRC has 7 RNAi stocks for FBgn0259213 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	37 ± 2	4 of 4	6.00	Up
Head	12 ± 2	3 of 4	2.10	None
Eye	3 ± 1	0 of 4	0.52	None
Thoracicoabdominal ganglion	25 ± 2	4 of 4	4.10	Up
Salivary gland	11 ± 5	1 of 4	1.84	None
Crop	6 ± 1	0 of 4	1.00	None
Midgut	5 ± 2	0 of 4	0.90	None
Tubule	2 ± 0	0 of 4	0.40	Down
Hindgut	4 ± 1	0 of 4	0.70	None
Heart	5 ± 1	0 of 4	0.85	None
Fat body	6 ± 2	0 of 4	0.99	None
Ovary	2 ± 1	0 of 4	0.50	Down
Testis	31 ± 3	4 of 4	5.10	Up
Male accessory glands	14 ± 1	0 of 4	2.30	Up
Virgin spermatheca	3 ± 0	0 of 4	0.54	None
Mated spermatheca	3 ± 1	0 of 4	0.55	None
Adult carcass	10 ± 3	0 of 4	1.60	None
Larval CNS	11 ± 4	4 of 4	1.88	None
Larval Salivary gland	10 ± 2	0 of 4	1.76	None
Larval midgut	4 ± 1	0 of 4	0.65	None
Larval tubule	3 ± 1	0 of 4	0.60	None
Larval hindgut	4 ± 1	0 of 4	0.69	None
Larval fat body	4 ± 1	0 of 4	0.70	None
Larval trachea	3 ± 3	0 of 4	0.49	None
Larval carcass	4 ± 2	0 of 4	0.80	None
S2 cells (growing)	2 ± 0	0 of 4	0.39	Down
Whole fly	6 ± 0	0 of 4

CG33515 (CG42313):

Annotation Number : CG15275
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259213
Gbrowse : chr2L:14935872-14936596 (-) // 100.0 //
Probeset : 1625299_at
Accessions : protein= NP_001014485;, nucleotide= NM_001014485;
Pathway : 0016020 // membrane // inferred from electronic annotation
FlyMine data for FBgn0259213.
VDRC has 7 RNAi stocks for FBgn0259213 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	13 ± 2	4 of 4	9.40	Up
Head	2 ± 1	0 of 4	1.80	None
Eye	3 ± 1	1 of 4	2.47	None
Thoracicoabdominal ganglion	9 ± 3	3 of 4	6.60	None
Salivary gland	8 ± 3	0 of 4	5.73	None
Crop	0 ± 0	0 of 4	0.50	None
Midgut	4 ± 1	0 of 4	2.70	None
Tubule	3 ± 0	0 of 4	2.10	Up
Hindgut	2 ± 0	0 of 4	1.70	None
Heart	0 ± 0	0 of 4	0.59	None
Fat body	5 ± 2	0 of 4	3.47	None
Ovary	0 ± 0	0 of 4	0.40	None
Testis	5 ± 0	3 of 4	3.60	Up
Male accessory glands	5 ± 3	0 of 4	3.80	None
Virgin spermatheca	2 ± 1	0 of 4	1.69	None
Mated spermatheca	2 ± 1	0 of 4	1.46	None
Adult carcass	1 ± 0	0 of 4	1.30	None
Larval CNS	5 ± 0	2 of 4	3.54	Up
Larval Salivary gland	6 ± 0	0 of 4	4.39	Up
Larval midgut	2 ± 1	0 of 4	1.46	None
Larval tubule	1 ± 0	0 of 4	0.80	None
Larval hindgut	0 ± 0	0 of 4	0.47	None
Larval fat body	4 ± 1	0 of 4	3.10	None
Larval trachea	0 ± 0	0 of 4	0.53	None
Larval carcass	0 ± 0	0 of 4	0.47	None
S2 cells (growing)	2 ± 0	1 of 4	1.36	None
Whole fly	1 ± 0	0 of 4

CG33515 (CG42313):

Annotation Number : CG15276
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259213
Gbrowse : chr2L:14911756-14914385 (-) // 100.0 //
Probeset : 1640482_at
Accessions : protein= NP_001014485;, nucleotide= NM_001014485;
Pathway : 0016020 // membrane // inferred from electronic annotation
FlyMine data for FBgn0259213.
VDRC has 7 RNAi stocks for FBgn0259213 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	29 ± 2	4 of 4	4.60	Up
Head	8 ± 2	0 of 4	1.40	None
Eye	3 ± 1	0 of 4	0.51	None
Thoracicoabdominal ganglion	25 ± 6	4 of 4	4.00	None
Salivary gland	2 ± 0	0 of 4	0.39	None
Crop	8 ± 0	0 of 4	1.40	None
Midgut	2 ± 0	0 of 4	0.30	None
Tubule	5 ± 0	0 of 4	0.90	None
Hindgut	8 ± 0	0 of 4	1.30	None
Heart	3 ± 1	0 of 4	0.61	None
Fat body	5 ± 4	1 of 4	0.92	None
Ovary	4 ± 0	0 of 4	0.60	None
Testis	5 ± 1	1 of 4	0.90	None
Male accessory glands	5 ± 2	0 of 4	0.80	None
Virgin spermatheca	2 ± 1	0 of 4	0.47	None
Mated spermatheca	0 ± 0	0 of 4	0.10	Down
Adult carcass	7 ± 1	0 of 4	1.10	None
Larval CNS	10 ± 1	3 of 4	1.66	None
Larval Salivary gland	6 ± 1	0 of 4	0.99	None
Larval midgut	3 ± 1	0 of 4	0.56	None
Larval tubule	4 ± 1	1 of 4	0.70	None
Larval hindgut	4 ± 1	0 of 4	0.76	None
Larval fat body	6 ± 1	0 of 4	1.00	None
Larval trachea	2 ± 2	0 of 4	0.32	None
Larval carcass	6 ± 0	0 of 4	1.03	None
S2 cells (growing)	6 ± 1	0 of 4	1.06	None
Whole fly	6 ± 1	0 of 4

Looking for FBgn0259213. 5 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720