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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0259214 through 18771 annotations produced 2 hits



CG2165 (PMCA):

Annotation Number : HDC16691
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259214
Gbrowse : chr4:349832-350054 (-) // 91.36 //
Probeset : 1632285_at
Accessions : protein= NP_001014687; /// NP_001014688; /// NP_001014689; /// NP_001033803; /// NP_726564; /// NP_726565;, nucleotide= NM_001014687; /// NM_001014688; /// NM_001014689; /// NM_001038714; /// NM_001038714; /// NM_166754; /// NM_166755;
Pathway : 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from sequence or str
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from
FlyMine data for FBgn0259214.
TRiP has 1 RNAi stocks for FBgn0259214 available for purchase.
VDRC has 3 RNAi stocks for FBgn0259214 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1558 ± 294 of 4 6.40Up
Head592 ± 344 of 4 2.40Up
Eye456 ± 534 of 4 1.88Up
Thoracicoabdominal ganglion2165 ± 274 of 4 8.90Up
Salivary gland179 ± 144 of 4 0.74Down
Crop1141 ± 214 of 4 4.70Up
Midgut203 ± 84 of 4 0.80None
Tubule346 ± 314 of 4 1.40Up
Hindgut609 ± 134 of 4 2.50Up
Heart523 ± 474 of 4 2.16Up
Fat body221 ± 194 of 4 0.91None
Ovary84 ± 14 of 4 0.30Down
Testis73 ± 34 of 4 0.30Down
Male accessory glands290 ± 114 of 4 1.20None
Virgin spermatheca247 ± 154 of 4 1.02None
Mated spermatheca274 ± 234 of 4 1.13None
Adult carcass659 ± 364 of 4 2.70Up
Larval CNS1294 ± 684 of 4 5.33Up
Larval Salivary gland182 ± 74 of 4 0.75Down
Larval midgut237 ± 84 of 4 0.98None
Larval tubule289 ± 94 of 4 1.20None
Larval hindgut691 ± 224 of 4 2.85Up
Larval fat body160 ± 74 of 4 0.70Down
Larval trachea364 ± 234 of 4 1.50Up
Larval carcass1135 ± 794 of 4 4.68Up
S2 cells (growing)520 ± 34 of 4 2.15Up
Whole fly242 ± 174 of 4



CG2165 (PMCA):

Annotation Number : CG2165
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259214
Gbrowse : chr4:369616-379298 (-) // 100.0 //
Probeset : 1634818_s_at
Accessions : protein= NP_001014687; /// NP_001014688; /// NP_001014689; /// NP_001033803; /// NP_726564; /// NP_726565;, nucleotide= NM_001014687; /// NM_001014688; /// NM_001014689; /// NM_001038714; /// NM_001038714; /// NM_166754; /// NM_166755;
Pathway : 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from sequence or str
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from
FlyMine data for FBgn0259214.
Homophila reports that CG2165 is a close match (4e-11) to human gene ATP13A2;KRPPD;PARK9 (NP_071372), a gene associated with Parkinson disease 9, 606693 (3).
BioGrid reports that CG2165 interacts with CG7347 CG8793 .
TRiP has 1 RNAi stocks for FBgn0259214 available for purchase.
VDRC has 3 RNAi stocks for FBgn0259214 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain689 ± 274 of 4 2.10Up
Head425 ± 484 of 4 1.30None
Eye333 ± 304 of 4 1.02None
Thoracicoabdominal ganglion711 ± 464 of 4 2.20Up
Salivary gland350 ± 204 of 4 1.07None
Crop638 ± 224 of 4 1.90Up
Midgut261 ± 164 of 4 0.80None
Tubule3992 ± 8484 of 412.20Up
Hindgut473 ± 104 of 4 1.40Up
Heart207 ± 144 of 4 0.63Down
Fat body212 ± 564 of 4 0.65Down
Ovary281 ± 44 of 4 0.90None
Testis54 ± 44 of 4 0.20Down
Male accessory glands318 ± 254 of 4 1.00None
Virgin spermatheca87 ± 34 of 4 0.27Down
Mated spermatheca87 ± 64 of 4 0.27Down
Adult carcass460 ± 104 of 4 1.40Up
Larval CNS428 ± 404 of 4 1.31Up
Larval Salivary gland207 ± 154 of 4 0.63Down
Larval midgut176 ± 144 of 4 0.54Down
Larval tubule3163 ± 824 of 4 9.70Up
Larval hindgut340 ± 194 of 4 1.04None
Larval fat body182 ± 194 of 4 0.60Down
Larval trachea136 ± 174 of 4 0.42Down
Larval carcass346 ± 194 of 4 1.06None
S2 cells (growing)690 ± 134 of 4 2.11Up
Whole fly327 ± 304 of 4

Looking for FBgn0259214. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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