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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0259219 through 18771 annotations produced 2 hits



CG17041 (CG42319):

Annotation Number : CG17041
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259219
Gbrowse : chr2R:9149988-9151840 (+) // 99.59 //
Probeset : 1624969_s_at
Accessions : protein= NP_001097301; /// NP_001137648; /// NP_610860; /// NP_610861; /// NP_725274; /// NP_725275;, nucleotide= NM_001103831; /// NM_001144176; /// NM_137016; /// NM_137017; /// NM_137017; /// NM_165977; /// NM_165978;
Interpro : 0005515 // protein binding // inferred from electronic annotation
FlyMine data for FBgn0259219.
BioGrid reports that CG17041 interacts with CG32156 CG3557 .
VDRC has 6 RNAi stocks for FBgn0259219 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain31 44 of 4 0.10Down
Head757 364 of 4 2.20Up
Eye358 414 of 4 1.03None
Thoracicoabdominal ganglion65 44 of 4 0.20Down
Salivary gland17 40 of 4 0.05Down
Crop1090 204 of 4 3.10Up
Midgut15 30 of 4 0.00Down
Tubule5 10 of 4 0.00Down
Hindgut246 134 of 4 0.70Down
Heart2048 1384 of 4 5.88Up
Fat body58 244 of 4 0.17Down
Ovary3 10 of 4 0.00Down
Testis4 00 of 4 0.00Down
Male accessory glands19 31 of 4 0.10Down
Virgin spermatheca18 20 of 4 0.05Down
Mated spermatheca15 30 of 4 0.04Down
Adult carcass1151 874 of 4 3.30Up
Larval CNS8 00 of 4 0.02Down
Larval Salivary gland10 30 of 4 0.03Down
Larval midgut25 14 of 4 0.07Down
Larval tubule4 10 of 4 0.00Down
Larval hindgut100 134 of 4 0.29Down
Larval fat body28 21 of 4 0.10Down
Larval trachea34 402 of 4 0.10Down
Larval carcass644 1134 of 4 1.85None
S2 cells (growing)1 00 of 4 0.01Down
Whole fly348 214 of 4



CG17041 (CG42319):

Annotation Number : CG17042
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259219
Gbrowse : chr2R:9151900-9153045 (+) // 100.0 //
Probeset : 1628407_at
Accessions : protein= NP_001097301; /// NP_001137648; /// NP_610860; /// NP_610861; /// NP_725274; /// NP_725275;, nucleotide= NM_001103831; /// NM_001144176; /// NM_137016; /// NM_137017; /// NM_137017; /// NM_165977; /// NM_165978;
Interpro : 0005515 // protein binding // inferred from electronic annotation
FlyMine data for FBgn0259219.
VDRC has 6 RNAi stocks for FBgn0259219 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 3.00None
Head5 10 of 4 6.10None
Eye2 10 of 4 2.65None
Thoracicoabdominal ganglion1 00 of 4 2.30None
Salivary gland7 30 of 4 8.65None
Crop3 00 of 4 3.80Up
Midgut1 00 of 4 1.60Up
Tubule2 00 of 4 2.70Up
Hindgut1 00 of 4 2.00None
Heart4 20 of 4 5.32None
Fat body1 00 of 4 1.53None
Ovary0 00 of 4 0.90None
Testis2 10 of 4 2.30None
Male accessory glands1 00 of 4 2.10None
Virgin spermatheca3 10 of 4 3.85None
Mated spermatheca3 20 of 4 4.09None
Adult carcass7 30 of 4 8.80None
Larval CNS0 00 of 4 1.15None
Larval Salivary gland10 20 of 412.53Up
Larval midgut1 00 of 4 1.53Up
Larval tubule1 00 of 4 1.70None
Larval hindgut1 00 of 4 2.03None
Larval fat body2 00 of 4 3.10None
Larval trachea3 30 of 4 3.62None
Larval carcass2 00 of 4 3.18Up
S2 cells (growing)1 00 of 4 1.79Up
Whole fly0 00 of 4

Looking for FBgn0259219. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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