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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0259221 through 18771 annotations produced 2 hits



March 2006 (FlyBase/BDGP 5.3) (chr2R:9302479-9326550 (-) // 100.0 //):

Annotation Number : CG17034
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse :
Probeset : 1627239_s_at
Accessions : protein= EC:3.6.3.1, nucleotide=
Interpro : 0006754 // ATP biosynthetic process // inferred from electronic annotation /// 0015914 // phospholipid transport // infe
Homophila reports that CG17034 is a close match (9e-11) to human gene ATP2C1;BCPM;HHD (NP_055197), a gene associated with Hailey-Hailey disease, 169600 (3).


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain891 174 of 4 6.40Up
Head409 34 of 4 3.00Up
Eye518 164 of 4 3.75Up
Thoracicoabdominal ganglion740 144 of 4 5.30Up
Salivary gland659 334 of 4 4.77Up
Crop361 104 of 4 2.60Up
Midgut194 64 of 4 1.40Up
Tubule785 384 of 4 5.70Up
Hindgut376 114 of 4 2.70Up
Heart616 154 of 4 4.46Up
Fat body286 434 of 4 2.07Up
Ovary99 54 of 4 0.70Down
Testis29 24 of 4 0.20Down
Male accessory glands395 34 of 4 2.90Up
Virgin spermatheca141 84 of 4 1.02None
Mated spermatheca146 94 of 4 1.06None
Adult carcass249 114 of 4 1.80Up
Larval CNS277 264 of 4 2.01Up
Larval Salivary gland49 34 of 4 0.36Down
Larval midgut126 24 of 4 0.91None
Larval tubule289 94 of 4 2.10Up
Larval hindgut236 104 of 4 1.71Up
Larval fat body33 44 of 4 0.20Down
Larval trachea85 34 of 4 0.62Down
Larval carcass253 94 of 4 1.83Up
S2 cells (growing)64 24 of 4 0.47Down
Whole fly138 114 of 4



CG17034 (CG42321):

Annotation Number : CG30061
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259221
Gbrowse : chr2R:9322586-9324302 (-) // 100.0 //
Probeset : 1632419_at
Accessions : protein= NP_001137649; /// NP_001137650; /// NP_001137651; /// NP_001137652; /// NP_001137653; /// NP_001137654; /// NP_001137655; /// NP_001137656; /// NP_610873; /// NP_725290; /// NP_725291; /// NP_725292;, nucleotide= NM_001144177; /// NM_001144178; /// NM_001144179; /// NM_001144180; /// NM_001144181; /// NM_001144182; /// NM_001144183; /// NM_001144184; /// NM_137029; /// NM_165984; /// NM_170624; /// NM_170625;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred f
FlyMine data for FBgn0259221.
TRiP has 1 RNAi stocks for FBgn0259221 available for purchase.
VDRC has 4 RNAi stocks for FBgn0259221 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 13 of 4 2.80None
Head4 10 of 4 1.50None
Eye1 10 of 4 0.63None
Thoracicoabdominal ganglion5 10 of 4 1.90None
Salivary gland8 20 of 4 3.09None
Crop1 00 of 4 0.50None
Midgut14 11 of 4 5.00Up
Tubule4 00 of 4 1.60Up
Hindgut3 10 of 4 1.20None
Heart5 10 of 4 1.84None
Fat body8 40 of 4 3.05None
Ovary1 00 of 4 0.30None
Testis0 00 of 4 0.30None
Male accessory glands5 10 of 4 1.80None
Virgin spermatheca11 11 of 4 3.97Up
Mated spermatheca9 22 of 4 3.17None
Adult carcass2 00 of 4 0.90None
Larval CNS2 20 of 4 0.77None
Larval Salivary gland8 21 of 4 2.96None
Larval midgut7 20 of 4 2.58None
Larval tubule3 10 of 4 1.10None
Larval hindgut2 00 of 4 0.86None
Larval fat body1 00 of 4 0.60None
Larval trachea7 30 of 4 2.44None
Larval carcass5 10 of 4 2.01None
S2 cells (growing)6 00 of 4 2.37None
Whole fly2 10 of 4

Looking for FBgn0259221. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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