FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0259221 through 18771 annotations produced 2 hits

CG17034 (CG42321):

Annotation Number : CG30061
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259221
Gbrowse : chr2R:9322586-9324302 (-) // 100.0 //
Probeset : 1632419_at
Accessions : protein= NP_001137649; /// NP_001137650; /// NP_001137651; /// NP_001137652; /// NP_001137653; /// NP_001137654; /// NP_001137655; /// NP_001137656; /// NP_610873; /// NP_725290; /// NP_725291; /// NP_725292;, nucleotide= NM_001144177; /// NM_001144178; /// NM_001144179; /// NM_001144180; /// NM_001144181; /// NM_001144182; /// NM_001144183; /// NM_001144184; /// NM_137029; /// NM_165984; /// NM_170624; /// NM_170625;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred f
FlyMine data for FBgn0259221.
TRiP has 1 RNAi stocks for FBgn0259221 available for purchase.
VDRC has 4 RNAi stocks for FBgn0259221 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	8 ± 1	3 of 4	2.80	None
Head	4 ± 1	0 of 4	1.50	None
Eye	1 ± 1	0 of 4	0.63	None
Thoracicoabdominal ganglion	5 ± 1	0 of 4	1.90	None
Salivary gland	8 ± 2	0 of 4	3.09	None
Crop	1 ± 0	0 of 4	0.50	None
Midgut	14 ± 1	1 of 4	5.00	Up
Tubule	4 ± 0	0 of 4	1.60	Up
Hindgut	3 ± 1	0 of 4	1.20	None
Heart	5 ± 1	0 of 4	1.84	None
Fat body	8 ± 4	0 of 4	3.05	None
Ovary	1 ± 0	0 of 4	0.30	None
Testis	0 ± 0	0 of 4	0.30	None
Male accessory glands	5 ± 1	0 of 4	1.80	None
Virgin spermatheca	11 ± 1	1 of 4	3.97	Up
Mated spermatheca	9 ± 2	2 of 4	3.17	None
Adult carcass	2 ± 0	0 of 4	0.90	None
Larval CNS	2 ± 2	0 of 4	0.77	None
Larval Salivary gland	8 ± 2	1 of 4	2.96	None
Larval midgut	7 ± 2	0 of 4	2.58	None
Larval tubule	3 ± 1	0 of 4	1.10	None
Larval hindgut	2 ± 0	0 of 4	0.86	None
Larval fat body	1 ± 0	0 of 4	0.60	None
Larval trachea	7 ± 3	0 of 4	2.44	None
Larval carcass	5 ± 1	0 of 4	2.01	None
S2 cells (growing)	6 ± 0	0 of 4	2.37	None
Whole fly	2 ± 1	0 of 4

March 2006 (FlyBase/BDGP 5.3) (chr2R:9302479-9326550 (-) // 100.0 //):

Annotation Number : CG17034
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse :
Probeset : 1627239_s_at
Accessions : protein= EC:3.6.3.1, nucleotide=
Interpro : 0006754 // ATP biosynthetic process // inferred from electronic annotation /// 0015914 // phospholipid transport // infe
Homophila reports that CG17034 is a close match (9e-11) to human gene ATP2C1;BCPM;HHD (NP_055197), a gene associated with Hailey-Hailey disease, 169600 (3).

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	891 ± 17	4 of 4	6.40	Up
Head	409 ± 3	4 of 4	3.00	Up
Eye	518 ± 16	4 of 4	3.75	Up
Thoracicoabdominal ganglion	740 ± 14	4 of 4	5.30	Up
Salivary gland	659 ± 33	4 of 4	4.77	Up
Crop	361 ± 10	4 of 4	2.60	Up
Midgut	194 ± 6	4 of 4	1.40	Up
Tubule	785 ± 38	4 of 4	5.70	Up
Hindgut	376 ± 11	4 of 4	2.70	Up
Heart	616 ± 15	4 of 4	4.46	Up
Fat body	286 ± 43	4 of 4	2.07	Up
Ovary	99 ± 5	4 of 4	0.70	Down
Testis	29 ± 2	4 of 4	0.20	Down
Male accessory glands	395 ± 3	4 of 4	2.90	Up
Virgin spermatheca	141 ± 8	4 of 4	1.02	None
Mated spermatheca	146 ± 9	4 of 4	1.06	None
Adult carcass	249 ± 11	4 of 4	1.80	Up
Larval CNS	277 ± 26	4 of 4	2.01	Up
Larval Salivary gland	49 ± 3	4 of 4	0.36	Down
Larval midgut	126 ± 2	4 of 4	0.91	None
Larval tubule	289 ± 9	4 of 4	2.10	Up
Larval hindgut	236 ± 10	4 of 4	1.71	Up
Larval fat body	33 ± 4	4 of 4	0.20	Down
Larval trachea	85 ± 3	4 of 4	0.62	Down
Larval carcass	253 ± 9	4 of 4	1.83	Up
S2 cells (growing)	64 ± 2	4 of 4	0.47	Down
Whole fly	138 ± 11	4 of 4

Looking for FBgn0259221. 2 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720