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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0259223 through 18771 annotations produced 2 hits



CG15055 (CG42323):

Annotation Number : CG32550
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259223
Gbrowse : chrX:18319965-18320550 (+) // 100.0 //
Probeset : 1629424_at
Accessions : protein= NP_001138218; /// NP_001138219; /// NP_573292;, nucleotide= NM_001144746; /// NM_001144747; /// NM_133064;
FlyMine data for FBgn0259223.
VDRC has 4 RNAi stocks for FBgn0259223 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 0.50None
Head1 00 of 4 0.40None
Eye4 10 of 4 0.78None
Thoracicoabdominal ganglion2 00 of 4 0.50None
Salivary gland2 00 of 4 0.44None
Crop2 00 of 4 0.40None
Midgut4 20 of 4 0.90None
Tubule12 00 of 4 2.30Up
Hindgut7 20 of 4 1.40None
Heart5 10 of 4 1.13None
Fat body3 00 of 4 0.69None
Ovary5 10 of 4 1.00None
Testis9 00 of 4 1.80None
Male accessory glands5 30 of 4 1.00None
Virgin spermatheca5 10 of 4 1.07None
Mated spermatheca5 20 of 4 1.04None
Adult carcass9 60 of 4 1.70None
Larval CNS2 10 of 4 0.44None
Larval Salivary gland2 00 of 4 0.40None
Larval midgut7 50 of 4 1.47None
Larval tubule6 20 of 4 1.30None
Larval hindgut2 00 of 4 0.37None
Larval fat body7 20 of 4 1.50None
Larval trachea1 10 of 4 0.38None
Larval carcass4 10 of 4 0.81None
S2 cells (growing)6 10 of 4 1.30None
Whole fly5 20 of 4



CG15055 (CG42323):

Annotation Number : CG15055
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259223
Gbrowse : chrX:18317525-18318583 (+) // 98.2 //
Probeset : 1634254_at
Accessions : protein= NP_001138218; /// NP_001138219; /// NP_573292;, nucleotide= NM_001144746; /// NM_001144747; /// NM_133064;
FlyMine data for FBgn0259223.
VDRC has 4 RNAi stocks for FBgn0259223 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.40None
Head2 10 of 4 1.00None
Eye0 00 of 4 0.23None
Thoracicoabdominal ganglion1 00 of 4 0.40None
Salivary gland2 00 of 4 0.90None
Crop0 00 of 4 0.30None
Midgut1 00 of 4 0.50None
Tubule1 00 of 4 0.50Down
Hindgut0 00 of 4 0.30None
Heart4 10 of 4 1.65None
Fat body4 30 of 4 1.58None
Ovary2 10 of 4 0.80None
Testis1 10 of 4 0.70None
Male accessory glands10 40 of 4 4.10None
Virgin spermatheca2 10 of 4 0.98None
Mated spermatheca2 10 of 4 0.94None
Adult carcass1 00 of 4 0.50None
Larval CNS1 00 of 4 0.50None
Larval Salivary gland5 20 of 4 2.04None
Larval midgut3 10 of 4 1.36None
Larval tubule1 10 of 4 0.70None
Larval hindgut2 00 of 4 0.93None
Larval fat body1 00 of 4 0.40None
Larval trachea1 20 of 4 0.68None
Larval carcass5 30 of 4 2.28None
S2 cells (growing)2 00 of 4 0.78None
Whole fly2 10 of 4

Looking for FBgn0259223. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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