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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0259224 through 18771 annotations produced 2 hits



CG14972 (CG42324):

Annotation Number : CG14973
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259224
Gbrowse : chr3L:3504542-3508533 (+) // 100.0 //
Probeset : 1630970_at
Accessions : protein= NP_647818; /// NP_647819;, nucleotide= NM_139561; /// NM_139562; /// NM_139562;
FlyMine data for FBgn0259224.
VDRC has 4 RNAi stocks for FBgn0259224 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain20 12 of 4 1.60Up
Head25 43 of 4 2.00None
Eye6 10 of 4 0.50Down
Thoracicoabdominal ganglion9 10 of 4 0.70None
Salivary gland3 00 of 4 0.27Down
Crop5 00 of 4 0.40Down
Midgut2 00 of 4 0.20Down
Tubule81 94 of 4 6.40Up
Hindgut8 00 of 4 0.60None
Heart22 24 of 4 1.72Up
Fat body79 234 of 4 6.17Up
Ovary5 20 of 4 0.40Down
Testis2 00 of 4 0.20Down
Male accessory glands3 10 of 4 0.30Down
Virgin spermatheca20 33 of 4 1.62None
Mated spermatheca22 13 of 4 1.74Up
Adult carcass50 43 of 4 3.90Up
Larval CNS5 20 of 4 0.43Down
Larval Salivary gland10 20 of 4 0.85None
Larval midgut2 00 of 4 0.17Down
Larval tubule174 144 of 413.60Up
Larval hindgut5 00 of 4 0.40Down
Larval fat body66 74 of 4 5.20Up
Larval trachea1 20 of 4 0.14Down
Larval carcass5 10 of 4 0.39Down
S2 cells (growing)208 74 of 416.22Up
Whole fly12 10 of 4



CG14972 (CG42324):

Annotation Number : CG14972
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259224
Gbrowse : chr3L:3485641-3486580 (+) // 100.0 //
Probeset : 1634936_at
Accessions : protein= NP_647818; /// NP_647819;, nucleotide= NM_139561; /// NM_139562; /// NM_139562;
FlyMine data for FBgn0259224.
VDRC has 4 RNAi stocks for FBgn0259224 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 10 of 4 1.90None
Head1 00 of 4 0.90None
Eye1 10 of 4 1.04None
Thoracicoabdominal ganglion5 10 of 4 2.70None
Salivary gland1 00 of 4 0.68None
Crop0 00 of 4 0.40None
Midgut6 30 of 4 3.30None
Tubule4 00 of 4 2.30Up
Hindgut3 00 of 4 2.10None
Heart7 30 of 4 3.97None
Fat body6 20 of 4 3.59Up
Ovary1 00 of 4 1.00None
Testis2 10 of 4 1.30None
Male accessory glands0 00 of 4 0.50None
Virgin spermatheca1 00 of 4 0.73None
Mated spermatheca1 00 of 4 0.54None
Adult carcass8 20 of 4 4.50None
Larval CNS1 00 of 4 0.58None
Larval Salivary gland2 00 of 4 1.49None
Larval midgut3 10 of 4 2.08None
Larval tubule29 34 of 415.90Up
Larval hindgut2 00 of 4 1.30None
Larval fat body18 34 of 4 9.80Up
Larval trachea0 00 of 4 0.53None
Larval carcass2 00 of 4 1.27None
S2 cells (growing)39 24 of 421.11Up
Whole fly1 10 of 4

Looking for FBgn0259224. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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