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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0259226 through 18771 annotations produced 2 hits



CG14747 (CG42326):

Annotation Number : CG14748
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259226
Gbrowse : chr2R:4460872-4465991 (-) // 100.0 //
Probeset : 1637753_at
Accessions : protein= NP_523660; /// NP_610391;, nucleotide= NM_078936; /// NM_078936; /// NM_136547;
FlyMine data for FBgn0259226.
BioGrid reports that CG14748 interacts with CG32514 .
VDRC has 6 RNAi stocks for FBgn0259226 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 ± 13 of 4 1.40None
Head36 ± 14 of 4 6.80Up
Eye98 ± 54 of 418.59Up
Thoracicoabdominal ganglion9 ± 02 of 4 1.80None
Salivary gland11 ± 20 of 4 2.24Up
Crop4 ± 00 of 4 0.90None
Midgut3 ± 10 of 4 0.70None
Tubule4 ± 00 of 4 0.80Down
Hindgut3 ± 00 of 4 0.60None
Heart4 ± 11 of 4 0.92None
Fat body5 ± 21 of 4 1.03None
Ovary1 ± 00 of 4 0.40None
Testis5 ± 13 of 4 1.10None
Male accessory glands40 ± 14 of 4 7.70Up
Virgin spermatheca2 ± 00 of 4 0.47None
Mated spermatheca11 ± 22 of 4 2.22None
Adult carcass14 ± 12 of 4 2.70Up
Larval CNS3 ± 13 of 4 0.75None
Larval Salivary gland6 ± 00 of 4 1.18None
Larval midgut3 ± 00 of 4 0.59None
Larval tubule5 ± 00 of 4 1.00None
Larval hindgut5 ± 11 of 4 0.96None
Larval fat body4 ± 10 of 4 0.90None
Larval trachea61 ± 134 of 411.61Up
Larval carcass15 ± 24 of 4 2.97Up
S2 cells (growing)2 ± 00 of 4 0.47None
Whole fly5 ± 11 of 4



CG14747 (CG42326):

Annotation Number : CG14747
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259226
Gbrowse : chr2R:4468332-4469795 (-) // 100.0 //
Probeset : 1640986_at
Accessions : protein= NP_523660; /// NP_610391;, nucleotide= NM_078936; /// NM_078936; /// NM_136547;
FlyMine data for FBgn0259226.
VDRC has 6 RNAi stocks for FBgn0259226 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.80None
Head5 ± 00 of 4 1.90None
Eye2 ± 10 of 4 0.76None
Thoracicoabdominal ganglion1 ± 00 of 4 0.50None
Salivary gland17 ± 21 of 4 5.87Up
Crop6 ± 10 of 4 2.10None
Midgut4 ± 10 of 4 1.60None
Tubule3 ± 00 of 4 1.30Up
Hindgut3 ± 10 of 4 1.00None
Heart1 ± 00 of 4 0.46None
Fat body3 ± 20 of 4 0.98None
Ovary1 ± 00 of 4 0.40None
Testis9 ± 03 of 4 3.10Up
Male accessory glands5 ± 30 of 4 1.90None
Virgin spermatheca1 ± 00 of 4 0.63None
Mated spermatheca2 ± 01 of 4 0.96None
Adult carcass3 ± 10 of 4 1.00None
Larval CNS1 ± 10 of 4 0.60None
Larval Salivary gland7 ± 00 of 4 2.35Up
Larval midgut4 ± 00 of 4 1.40None
Larval tubule5 ± 01 of 4 1.80None
Larval hindgut2 ± 00 of 4 0.74None
Larval fat body10 ± 31 of 4 3.50None
Larval trachea2 ± 10 of 4 0.85None
Larval carcass2 ± 00 of 4 0.79None
S2 cells (growing)3 ± 00 of 4 1.00None
Whole fly3 ± 10 of 4

Looking for FBgn0259226. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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