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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0259229 through 18771 annotations produced 2 hits



CG14343 (CG42329):

Annotation Number : CG14343
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259229
Gbrowse : chr2L:1219362-1220039 (+) // 100.0 //
Probeset : 1636678_at
Accessions : protein= NP_608590;, nucleotide= NM_134746;
Interpro : "0008415 // acyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // infer
FlyMine data for FBgn0259229.
VDRC has 4 RNAi stocks for FBgn0259229 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.30None
Head2 ± 10 of 4 1.30None
Eye1 ± 00 of 4 0.85None
Thoracicoabdominal ganglion1 ± 00 of 4 0.50None
Salivary gland10 ± 30 of 4 5.08None
Crop185 ± 344 of 488.10Up
Midgut4 ± 10 of 4 1.90None
Tubule3 ± 00 of 4 1.40Up
Hindgut3 ± 10 of 4 1.60None
Heart3 ± 00 of 4 1.62None
Fat body3 ± 20 of 4 1.81None
Ovary2 ± 00 of 4 1.00None
Testis2 ± 10 of 4 1.30None
Male accessory glands5 ± 20 of 4 2.70None
Virgin spermatheca1 ± 00 of 4 0.86None
Mated spermatheca2 ± 10 of 4 1.35None
Adult carcass9 ± 10 of 4 4.50Up
Larval CNS2 ± 10 of 4 1.05None
Larval Salivary gland3 ± 10 of 4 1.60None
Larval midgut12 ± 00 of 4 5.81Up
Larval tubule2 ± 00 of 4 1.20None
Larval hindgut2 ± 00 of 4 1.32None
Larval fat body9 ± 20 of 4 4.50Up
Larval trachea2 ± 20 of 4 1.20None
Larval carcass4 ± 10 of 4 2.25None
S2 cells (growing)1 ± 00 of 4 0.55None
Whole fly2 ± 00 of 4



CG14343 (CG42329):

Annotation Number : CG5156
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259229
Gbrowse : chr2L:1227976-1229471 (+) // 100.0 //
Probeset : 1637590_at
Accessions : protein= NP_608590;, nucleotide= NM_134746;
Interpro : "0008415 // acyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // infer
FlyMine data for FBgn0259229.
VDRC has 4 RNAi stocks for FBgn0259229 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.10Down
Head41 ± 104 of 4 4.40None
Eye57 ± 84 of 4 5.96Up
Thoracicoabdominal ganglion0 ± 00 of 4 0.00Down
Salivary gland5 ± 10 of 4 0.53Down
Crop848 ± 1084 of 488.60Up
Midgut11 ± 31 of 4 1.20None
Tubule120 ± 244 of 412.60Up
Hindgut9 ± 03 of 4 1.00None
Heart4 ± 10 of 4 0.48Down
Fat body12 ± 31 of 4 1.27None
Ovary1 ± 00 of 4 0.10Down
Testis1 ± 00 of 4 0.20Down
Male accessory glands1 ± 00 of 4 0.10Down
Virgin spermatheca18 ± 14 of 4 1.91Up
Mated spermatheca11 ± 13 of 4 1.18None
Adult carcass37 ± 24 of 4 3.90Up
Larval CNS0 ± 00 of 4 0.09Down
Larval Salivary gland3 ± 20 of 4 0.40None
Larval midgut55 ± 74 of 4 5.80Up
Larval tubule4 ± 10 of 4 0.50Down
Larval hindgut9 ± 14 of 4 1.00None
Larval fat body40 ± 124 of 4 4.30None
Larval trachea2 ± 20 of 4 0.25Down
Larval carcass33 ± 44 of 4 3.49Up
S2 cells (growing)0 ± 00 of 4 0.05Down
Whole fly9 ± 12 of 4

Looking for FBgn0259229. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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