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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0259231 through 18771 annotations produced 1 hits



CCK-like receptor at 17D1 (CCKLR-17D1):

Annotation Number : CG6857
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259231
Gbrowse : chrX:18602696-18620605 (-) // 100.0 //
Probeset : 1639647_at
Accessions : protein= NP_001097021;, nucleotide= NM_001103551;
Pathway : 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred f
Interpro : 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferre
FlyMine data for FBgn0259231.
Homophila reports that CG6857 is a close match (5e-11) to human gene HTR2A (NP_000612), a gene associated with {Alcohol dependence, susceptibility to}, 103780 (3);{Anorexia nervosa, susceptibility to}, 606788 (3);{Major depressive disorder, response to citalopram therapy in}, 608516 (3);{Obsessive-compulsive disorder, susceptibility to}, 164230 (3);{Schizophrenia, susceptibility to}, 181500 (3);{Seasonal affective disorder, susceptibility to}, 608516 (3).
TRiP has 1 RNAi stocks for FBgn0259231 available for purchase.
VDRC has 3 RNAi stocks for FBgn0259231 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 1.90Up
Head2 ± 10 of 4 2.70None
Eye1 ± 00 of 4 1.97None
Thoracicoabdominal ganglion2 ± 10 of 4 2.80None
Salivary gland2 ± 00 of 4 2.59Up
Crop0 ± 00 of 4 0.80None
Midgut1 ± 00 of 4 1.70None
Tubule0 ± 00 of 4 0.90None
Hindgut0 ± 00 of 4 0.70None
Heart0 ± 00 of 4 1.00None
Fat body2 ± 30 of 4 3.19None
Ovary1 ± 00 of 4 1.20None
Testis0 ± 00 of 4 0.80None
Male accessory glands1 ± 00 of 4 1.50None
Virgin spermatheca1 ± 10 of 4 2.38None
Mated spermatheca1 ± 00 of 4 1.44None
Adult carcass1 ± 00 of 4 2.20None
Larval CNS1 ± 00 of 4 1.38None
Larval Salivary gland1 ± 00 of 4 1.31None
Larval midgut0 ± 00 of 4 1.09None
Larval tubule0 ± 00 of 4 1.00None
Larval hindgut0 ± 00 of 4 0.66None
Larval fat body1 ± 00 of 4 1.30None
Larval trachea0 ± 00 of 4 0.75None
Larval carcass1 ± 00 of 4 1.66None
S2 cells (growing)1 ± 00 of 4 1.44None
Whole fly0 ± 00 of 4

Looking for FBgn0259231. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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