FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0259234 through 18771 annotations produced 4 hits

Calmodulin-binding transcription activator (Camta):

Annotation Number : CG8809
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259234
Gbrowse : chr2R:5358982-5365597 (+) // 100.0 //
Probeset : 1626232_at
Accessions : protein= NP_001137624; /// NP_001137625; /// NP_001137626; /// NP_001163098; /// NP_610491;, nucleotide= NM_001144152; /// NM_001144153; /// NM_001144154; /// NM_001169627; /// NM_136647;
Pathway : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from sequence or structural similari
Interpro : 0003677 // DNA binding // inferred from sequence or structural similarity /// 0003700 // sequence-specific DNA binding t
FlyMine data for FBgn0259234.
TRiP has 3 RNAi stocks for FBgn0259234 available for purchase.
VDRC has 7 RNAi stocks for FBgn0259234 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	53 ± 6	4 of 4	1.90	Up
Head	17 ± 2	3 of 4	0.60	None
Eye	39 ± 11	4 of 4	1.36	None
Thoracicoabdominal ganglion	53 ± 9	4 of 4	1.90	None
Salivary gland	22 ± 3	2 of 4	0.77	None
Crop	18 ± 1	4 of 4	0.60	None
Midgut	10 ± 1	2 of 4	0.40	Down
Tubule	28 ± 4	4 of 4	1.00	None
Hindgut	11 ± 1	4 of 4	0.40	Down
Heart	9 ± 0	4 of 4	0.34	Down
Fat body	11 ± 2	3 of 4	0.39	Down
Ovary	110 ± 7	4 of 4	3.80	Up
Testis	79 ± 7	4 of 4	2.70	Up
Male accessory glands	16 ± 2	1 of 4	0.60	None
Virgin spermatheca	6 ± 0	0 of 4	0.23	Down
Mated spermatheca	10 ± 1	2 of 4	0.37	Down
Adult carcass	11 ± 2	1 of 4	0.40	Down
Larval CNS	14 ± 1	4 of 4	0.52	Down
Larval Salivary gland	10 ± 1	2 of 4	0.37	Down
Larval midgut	7 ± 1	1 of 4	0.27	Down
Larval tubule	21 ± 1	4 of 4	0.80	None
Larval hindgut	9 ± 1	4 of 4	0.34	Down
Larval fat body	23 ± 7	2 of 4	0.80	None
Larval trachea	11 ± 1	4 of 4	0.40	Down
Larval carcass	7 ± 0	2 of 4	0.25	Down
S2 cells (growing)	29 ± 1	4 of 4	1.04	None
Whole fly	28 ± 4	4 of 4

Calmodulin-binding transcription activator (Camta):

Annotation Number : S.C2R000576
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259234
Gbrowse : chr2R:5326116-5358852 (+) // 100.0 //
Probeset : 1623392_at
Accessions : protein= NP_001137624; /// NP_001137625; /// NP_001137626; /// NP_001163098; /// NP_610491;, nucleotide= NM_001144152; /// NM_001144153; /// NM_001144154; /// NM_001169627; /// NM_136647;
Pathway : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from sequence or structural similari
Interpro : 0003677 // DNA binding // inferred from sequence or structural similarity /// 0003700 // sequence-specific DNA binding t
FlyMine data for FBgn0259234.
TRiP has 3 RNAi stocks for FBgn0259234 available for purchase.
VDRC has 7 RNAi stocks for FBgn0259234 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	7 ± 1	1 of 4	1.60	None
Head	4 ± 1	0 of 4	1.00	None
Eye	5 ± 1	0 of 4	1.19	None
Thoracicoabdominal ganglion	6 ± 2	0 of 4	1.30	None
Salivary gland	8 ± 4	0 of 4	1.82	None
Crop	9 ± 1	0 of 4	2.00	None
Midgut	2 ± 0	0 of 4	0.40	None
Tubule	6 ± 1	0 of 4	1.30	None
Hindgut	3 ± 1	0 of 4	0.80	None
Heart	3 ± 1	0 of 4	0.66	None
Fat body	5 ± 2	0 of 4	1.07	None
Ovary	2 ± 0	0 of 4	0.60	None
Testis	2 ± 0	0 of 4	0.50	None
Male accessory glands	12 ± 1	0 of 4	2.50	Up
Virgin spermatheca	7 ± 3	0 of 4	1.57	None
Mated spermatheca	4 ± 2	0 of 4	1.03	None
Adult carcass	5 ± 1	0 of 4	1.20	None
Larval CNS	4 ± 1	0 of 4	0.95	None
Larval Salivary gland	7 ± 1	0 of 4	1.48	None
Larval midgut	2 ± 1	0 of 4	0.56	None
Larval tubule	7 ± 1	0 of 4	1.50	None
Larval hindgut	2 ± 0	0 of 4	0.41	None
Larval fat body	10 ± 1	0 of 4	2.20	Up
Larval trachea	2 ± 2	0 of 4	0.58	None
Larval carcass	1 ± 0	0 of 4	0.35	None
S2 cells (growing)	4 ± 0	0 of 4	1.05	None
Whole fly	4 ± 1	1 of 4

Calmodulin-binding transcription activator (Camta):

Annotation Number : CG13952
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259234
Gbrowse : chr2R:5336403-5337900 (+) // 100.0 //
Probeset : 1641266_at
Accessions : protein= NP_001137624; /// NP_001137625; /// NP_001137626; /// NP_001163098; /// NP_610491;, nucleotide= NM_001144152; /// NM_001144153; /// NM_001144154; /// NM_001169627; /// NM_136647;
Pathway : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from sequence or structural similari
Interpro : 0003677 // DNA binding // inferred from sequence or structural similarity /// 0003700 // sequence-specific DNA binding t
FlyMine data for FBgn0259234.
TRiP has 3 RNAi stocks for FBgn0259234 available for purchase.
VDRC has 7 RNAi stocks for FBgn0259234 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	5 ± 1	0 of 4	7.00	None
Head	1 ± 0	0 of 4	1.60	None
Eye	2 ± 1	0 of 4	3.09	None
Thoracicoabdominal ganglion	3 ± 2	0 of 4	3.90	None
Salivary gland	3 ± 0	0 of 4	3.70	Up
Crop	1 ± 0	0 of 4	1.90	Up
Midgut	3 ± 1	0 of 4	3.80	None
Tubule	1 ± 0	0 of 4	1.80	Up
Hindgut	2 ± 0	0 of 4	2.90	None
Heart	0 ± 0	0 of 4	0.82	None
Fat body	1 ± 0	0 of 4	1.45	None
Ovary	1 ± 0	0 of 4	1.80	None
Testis	0 ± 0	0 of 4	1.10	None
Male accessory glands	1 ± 0	0 of 4	1.80	None
Virgin spermatheca	0 ± 0	0 of 4	0.70	None
Mated spermatheca	1 ± 0	0 of 4	1.55	None
Adult carcass	1 ± 0	0 of 4	2.30	Up
Larval CNS	3 ± 3	0 of 4	4.42	None
Larval Salivary gland	3 ± 0	0 of 4	3.91	Up
Larval midgut	2 ± 1	0 of 4	3.39	None
Larval tubule	3 ± 1	0 of 4	3.90	None
Larval hindgut	2 ± 1	0 of 4	3.03	None
Larval fat body	1 ± 0	0 of 4	1.80	None
Larval trachea	1 ± 0	0 of 4	1.73	None
Larval carcass	2 ± 1	0 of 4	3.33	None
S2 cells (growing)	5 ± 2	0 of 4	6.70	None
Whole fly	0 ± 0	0 of 4

Calmodulin-binding transcription activator (Camta):

Annotation Number : CG13953
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259234
Gbrowse : chr2R:5345544-5346309 (+) // 100.0 //
Probeset : 1638449_at
Accessions : protein= NP_001137624; /// NP_001137625; /// NP_001137626; /// NP_001163098; /// NP_610491;, nucleotide= NM_001144152; /// NM_001144153; /// NM_001144154; /// NM_001169627; /// NM_136647;
Pathway : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from sequence or structural similari
Interpro : 0003677 // DNA binding // inferred from sequence or structural similarity /// 0003700 // sequence-specific DNA binding t
FlyMine data for FBgn0259234.
TRiP has 3 RNAi stocks for FBgn0259234 available for purchase.
VDRC has 7 RNAi stocks for FBgn0259234 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	0 ± 0	0 of 4	1.90	None
Head	1 ± 0	0 of 4	2.20	Up
Eye	2 ± 0	0 of 4	4.89	None
Thoracicoabdominal ganglion	0 ± 0	0 of 4	1.20	None
Salivary gland	7 ± 2	0 of 4	15.61	None
Crop	1 ± 0	0 of 4	2.20	None
Midgut	1 ± 0	0 of 4	2.40	Up
Tubule	2 ± 0	0 of 4	4.40	Up
Hindgut	0 ± 0	0 of 4	1.90	None
Heart	1 ± 0	0 of 4	3.06	None
Fat body	0 ± 0	0 of 4	1.83	None
Ovary	1 ± 0	0 of 4	3.20	None
Testis	0 ± 0	0 of 4	1.10	None
Male accessory glands	1 ± 0	0 of 4	2.80	None
Virgin spermatheca	0 ± 0	0 of 4	1.61	None
Mated spermatheca	0 ± 0	0 of 4	1.83	None
Adult carcass	2 ± 1	0 of 4	4.30	None
Larval CNS	0 ± 0	0 of 4	1.28	None
Larval Salivary gland	1 ± 0	0 of 4	2.33	Up
Larval midgut	0 ± 0	0 of 4	1.50	None
Larval tubule	0 ± 0	0 of 4	1.70	None
Larval hindgut	0 ± 0	0 of 4	1.78	Up
Larval fat body	0 ± 0	0 of 4	2.00	Up
Larval trachea	0 ± 0	0 of 4	1.61	None
Larval carcass	1 ± 0	0 of 4	3.61	None
S2 cells (growing)	0 ± 0	0 of 4	2.00	None
Whole fly	0 ± 0	0 of 4

Looking for FBgn0259234. 4 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720