FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0259242 through 18771 annotations produced 2 hits

CG12543 (CG42340):

Annotation Number : CG12543
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259242
Gbrowse : chrX:6377818-6379099 (-) // 100.0 //
Probeset : 1634059_at
Accessions : protein= NP_001138165;, nucleotide= NM_001144693;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0005216 // ion channel activity // inferred from electronic annotation /// 0005267 // potassium channel activity // infe
FlyMine data for FBgn0259242.
TRiP has 1 RNAi stocks for FBgn0259242 available for purchase.
VDRC has 6 RNAi stocks for FBgn0259242 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	26 ± 1	4 of 4	7.60	Up
Head	5 ± 1	0 of 4	1.40	None
Eye	10 ± 2	1 of 4	3.14	Up
Thoracicoabdominal ganglion	14 ± 1	4 of 4	4.10	Up
Salivary gland	11 ± 4	0 of 4	3.20	None
Crop	8 ± 1	1 of 4	2.30	None
Midgut	1 ± 0	0 of 4	0.50	None
Tubule	5 ± 1	0 of 4	1.70	Up
Hindgut	3 ± 1	1 of 4	0.90	None
Heart	3 ± 1	1 of 4	1.06	None
Fat body	5 ± 2	0 of 4	1.46	None
Ovary	1 ± 0	0 of 4	0.40	None
Testis	7 ± 1	0 of 4	2.10	None
Male accessory glands	7 ± 0	1 of 4	2.00	None
Virgin spermatheca	4 ± 0	0 of 4	1.24	None
Mated spermatheca	2 ± 1	0 of 4	0.74	None
Adult carcass	12 ± 1	0 of 4	3.70	Up
Larval CNS	9 ± 3	3 of 4	2.76	Up
Larval Salivary gland	4 ± 1	0 of 4	1.20	None
Larval midgut	3 ± 0	0 of 4	1.05	None
Larval tubule	11 ± 1	4 of 4	3.20	Up
Larval hindgut	3 ± 1	0 of 4	0.93	None
Larval fat body	8 ± 2	0 of 4	2.50	None
Larval trachea	2 ± 1	0 of 4	0.69	None
Larval carcass	9 ± 1	1 of 4	2.66	None
S2 cells (growing)	4 ± 0	0 of 4	1.18	None
Whole fly	3 ± 1	0 of 4

CG12543 (CG42340):

Annotation Number : CG3367
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259242
Gbrowse : chrX:6361066-6362861 (-) // 100.0 //
Probeset : 1640438_at
Accessions : protein= NP_001138165;, nucleotide= NM_001144693;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0005216 // ion channel activity // inferred from electronic annotation /// 0005267 // potassium channel activity // infe
FlyMine data for FBgn0259242.
TRiP has 1 RNAi stocks for FBgn0259242 available for purchase.
VDRC has 6 RNAi stocks for FBgn0259242 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	12 ± 1	2 of 4	2.00	None
Head	5 ± 1	0 of 4	0.90	None
Eye	2 ± 0	0 of 4	0.38	None
Thoracicoabdominal ganglion	7 ± 1	0 of 4	1.20	None
Salivary gland	18 ± 2	0 of 4	3.00	Up
Crop	4 ± 2	0 of 4	0.80	None
Midgut	4 ± 2	0 of 4	0.70	None
Tubule	5 ± 1	0 of 4	0.80	None
Hindgut	5 ± 0	0 of 4	0.90	None
Heart	1 ± 0	0 of 4	0.21	None
Fat body	5 ± 3	0 of 4	0.91	None
Ovary	6 ± 0	1 of 4	1.00	None
Testis	6 ± 0	0 of 4	1.10	None
Male accessory glands	5 ± 1	0 of 4	0.80	None
Virgin spermatheca	3 ± 0	0 of 4	0.57	None
Mated spermatheca	6 ± 1	0 of 4	1.08	None
Adult carcass	11 ± 2	0 of 4	1.80	None
Larval CNS	8 ± 1	3 of 4	1.33	None
Larval Salivary gland	3 ± 1	0 of 4	0.56	None
Larval midgut	6 ± 1	0 of 4	1.03	None
Larval tubule	14 ± 1	3 of 4	2.30	Up
Larval hindgut	5 ± 1	1 of 4	0.85	None
Larval fat body	5 ± 1	0 of 4	0.80	None
Larval trachea	2 ± 1	0 of 4	0.35	None
Larval carcass	6 ± 0	0 of 4	1.08	None
S2 cells (growing)	4 ± 1	0 of 4	0.67	None
Whole fly	6 ± 2	0 of 4

Looking for FBgn0259242. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720