FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0259243 through 18771 annotations produced 2 hits

regulatory subunit of protein kinase A (Pka-R1):

Annotation Number : CG3263
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259243
Gbrowse : chr3L:20809204-20829165 (+) // 100.0 //
Probeset : 1635156_s_at
Accessions : protein= NP_001014593; /// NP_001014594; /// NP_001014595; /// NP_001014596; /// NP_001014597; /// NP_001014598; /// NP_524189; /// NP_649263; /// NP_730573; /// NP_730574; /// NP_730576;, nucleotide= NM_001014593; /// NM_001014593; /// NM_001014594; /// NM_001014594; /// NM_001014595; /// NM_001014595; /// NM_001014596; /// NM_001014596; /// NM_001014597; /// NM_001014597; /// NM_001014598; /// NM_001014598; /// NM_079465; /// NM_079465; /// NM_141006; /// NM_168875; /// NM_168875; /// NM_168876; /// NM_168876; /// NM_168877; /// NM_168877;
Pathway : chitin-based cuticle // inferred from mutant phenotype /// 0008103 // oocyte microtubule cytoskeleton polarization // i
Interpro : 0005952 // cAMP-dependent protein kinase complex // inferred from electronic annotation /// 0005952 // cAMP-dependent pr
FlyMine data for FBgn0259243.
Homophila reports that CG3263 is a close match (1e-131) to human gene CAR;CNC1;PPNAD1;PRKAR1A;TSE1 (NP_997637), a gene associated with Adrenocortical tumor, somatic (3);Carney complex, type 1, 160980 (3);Myxoma, intracardiac, 255960 (3);Pigmented adrenocortical disease, primary, 1, 610489 (3);Thyroid carcinoma, papillary, 188550 (3).
BioGrid reports that CG3263 interacts with CG9032 CG4379 CG1063 CG5061 CG32498 CG15319 .
TRiP has 2 RNAi stocks for FBgn0259243 available for purchase.
VDRC has 4 RNAi stocks for FBgn0259243 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	611 ± 21	4 of 4	8.10	Up
Head	220 ± 16	4 of 4	2.90	Up
Eye	65 ± 13	4 of 4	0.87	None
Thoracicoabdominal ganglion	441 ± 21	4 of 4	5.90	Up
Salivary gland	59 ± 2	4 of 4	0.79	Down
Crop	86 ± 4	4 of 4	1.20	None
Midgut	67 ± 3	4 of 4	0.90	None
Tubule	49 ± 3	4 of 4	0.70	Down
Hindgut	95 ± 0	4 of 4	1.30	Up
Heart	54 ± 7	4 of 4	0.72	None
Fat body	118 ± 9	4 of 4	1.57	Up
Ovary	41 ± 2	4 of 4	0.60	Down
Testis	15 ± 1	4 of 4	0.20	Down
Male accessory glands	92 ± 7	4 of 4	1.20	None
Virgin spermatheca	39 ± 3	4 of 4	0.52	Down
Mated spermatheca	35 ± 3	4 of 4	0.48	Down
Adult carcass	113 ± 8	4 of 4	1.50	Up
Larval CNS	412 ± 54	4 of 4	5.48	Up
Larval Salivary gland	69 ± 6	4 of 4	0.93	None
Larval midgut	101 ± 3	4 of 4	1.34	Up
Larval tubule	253 ± 9	4 of 4	3.40	Up
Larval hindgut	311 ± 12	4 of 4	4.14	Up
Larval fat body	77 ± 7	4 of 4	1.00	None
Larval trachea	57 ± 5	4 of 4	0.77	Down
Larval carcass	437 ± 48	4 of 4	5.81	Up
S2 cells (growing)	58 ± 3	4 of 4	0.77	Down
Whole fly	75 ± 4	4 of 4

regulatory subunit of protein kinase A (Pka-R1):

Annotation Number : CG12452
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259243
Gbrowse : chr3L:20812134-20812626 (+) // 100.0 //
Probeset : 1628707_at
Accessions : protein= NP_001014593; /// NP_001014594; /// NP_001014595; /// NP_001014596; /// NP_001014597; /// NP_001014598; /// NP_524189; /// NP_649263; /// NP_730573; /// NP_730574; /// NP_730576;, nucleotide= NM_001014593; /// NM_001014593; /// NM_001014594; /// NM_001014594; /// NM_001014595; /// NM_001014595; /// NM_001014596; /// NM_001014596; /// NM_001014597; /// NM_001014597; /// NM_001014598; /// NM_001014598; /// NM_079465; /// NM_079465; /// NM_141006; /// NM_168875; /// NM_168875; /// NM_168876; /// NM_168876; /// NM_168877; /// NM_168877;
Pathway : chitin-based cuticle // inferred from mutant phenotype /// 0008103 // oocyte microtubule cytoskeleton polarization // i
Interpro : 0005952 // cAMP-dependent protein kinase complex // inferred from electronic annotation /// 0005952 // cAMP-dependent pr
FlyMine data for FBgn0259243.
BioGrid reports that CG12452 interacts with CG5643 .
TRiP has 2 RNAi stocks for FBgn0259243 available for purchase.
VDRC has 4 RNAi stocks for FBgn0259243 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	12 ± 2	3 of 4	11.40	Up
Head	1 ± 0	0 of 4	0.80	None
Eye	2 ± 0	0 of 4	1.82	None
Thoracicoabdominal ganglion	3 ± 2	0 of 4	3.00	None
Salivary gland	4 ± 1	0 of 4	3.73	None
Crop	1 ± 0	0 of 4	1.20	None
Midgut	1 ± 0	0 of 4	1.20	None
Tubule	1 ± 0	0 of 4	1.00	None
Hindgut	0 ± 0	0 of 4	0.80	None
Heart	3 ± 0	0 of 4	3.11	Up
Fat body	1 ± 0	0 of 4	1.24	None
Ovary	0 ± 0	0 of 4	0.70	None
Testis	1 ± 0	0 of 4	1.10	None
Male accessory glands	3 ± 1	0 of 4	2.80	None
Virgin spermatheca	2 ± 1	0 of 4	1.89	None
Mated spermatheca	1 ± 0	0 of 4	0.91	None
Adult carcass	1 ± 0	0 of 4	1.40	None
Larval CNS	1 ± 0	0 of 4	1.04	None
Larval Salivary gland	0 ± 0	0 of 4	0.78	None
Larval midgut	1 ± 0	0 of 4	1.53	None
Larval tubule	0 ± 0	0 of 4	0.70	None
Larval hindgut	0 ± 0	0 of 4	0.60	Down
Larval fat body	1 ± 0	0 of 4	1.20	None
Larval trachea	0 ± 0	0 of 4	0.78	None
Larval carcass	1 ± 0	0 of 4	0.91	None
S2 cells (growing)	0 ± 0	0 of 4	0.38	Down
Whole fly	1 ± 0	0 of 4

Looking for FBgn0259243. 2 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720