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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0259243 through 18771 annotations produced 2 hits



regulatory subunit of protein kinase A (Pka-R1):

Annotation Number : CG3263
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259243
Gbrowse : chr3L:20809204-20829165 (+) // 100.0 //
Probeset : 1635156_s_at
Accessions : protein= NP_001014593; /// NP_001014594; /// NP_001014595; /// NP_001014596; /// NP_001014597; /// NP_001014598; /// NP_524189; /// NP_649263; /// NP_730573; /// NP_730574; /// NP_730576;, nucleotide= NM_001014593; /// NM_001014593; /// NM_001014594; /// NM_001014594; /// NM_001014595; /// NM_001014595; /// NM_001014596; /// NM_001014596; /// NM_001014597; /// NM_001014597; /// NM_001014598; /// NM_001014598; /// NM_079465; /// NM_079465; /// NM_141006; /// NM_168875; /// NM_168875; /// NM_168876; /// NM_168876; /// NM_168877; /// NM_168877;
Pathway : chitin-based cuticle // inferred from mutant phenotype /// 0008103 // oocyte microtubule cytoskeleton polarization // i
Interpro : 0005952 // cAMP-dependent protein kinase complex // inferred from electronic annotation /// 0005952 // cAMP-dependent pr
FlyMine data for FBgn0259243.
Homophila reports that CG3263 is a close match (1e-131) to human gene CAR;CNC1;PPNAD1;PRKAR1A;TSE1 (NP_997637), a gene associated with Adrenocortical tumor, somatic (3);Carney complex, type 1, 160980 (3);Myxoma, intracardiac, 255960 (3);Pigmented adrenocortical disease, primary, 1, 610489 (3);Thyroid carcinoma, papillary, 188550 (3).
BioGrid reports that CG3263 interacts with CG9032 CG4379 CG1063 CG5061 CG32498 CG15319 .
TRiP has 2 RNAi stocks for FBgn0259243 available for purchase.
VDRC has 4 RNAi stocks for FBgn0259243 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain611 214 of 4 8.10Up
Head220 164 of 4 2.90Up
Eye65 134 of 4 0.87None
Thoracicoabdominal ganglion441 214 of 4 5.90Up
Salivary gland59 24 of 4 0.79Down
Crop86 44 of 4 1.20None
Midgut67 34 of 4 0.90None
Tubule49 34 of 4 0.70Down
Hindgut95 04 of 4 1.30Up
Heart54 74 of 4 0.72None
Fat body118 94 of 4 1.57Up
Ovary41 24 of 4 0.60Down
Testis15 14 of 4 0.20Down
Male accessory glands92 74 of 4 1.20None
Virgin spermatheca39 34 of 4 0.52Down
Mated spermatheca35 34 of 4 0.48Down
Adult carcass113 84 of 4 1.50Up
Larval CNS412 544 of 4 5.48Up
Larval Salivary gland69 64 of 4 0.93None
Larval midgut101 34 of 4 1.34Up
Larval tubule253 94 of 4 3.40Up
Larval hindgut311 124 of 4 4.14Up
Larval fat body77 74 of 4 1.00None
Larval trachea57 54 of 4 0.77Down
Larval carcass437 484 of 4 5.81Up
S2 cells (growing)58 34 of 4 0.77Down
Whole fly75 44 of 4



regulatory subunit of protein kinase A (Pka-R1):

Annotation Number : CG12452
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259243
Gbrowse : chr3L:20812134-20812626 (+) // 100.0 //
Probeset : 1628707_at
Accessions : protein= NP_001014593; /// NP_001014594; /// NP_001014595; /// NP_001014596; /// NP_001014597; /// NP_001014598; /// NP_524189; /// NP_649263; /// NP_730573; /// NP_730574; /// NP_730576;, nucleotide= NM_001014593; /// NM_001014593; /// NM_001014594; /// NM_001014594; /// NM_001014595; /// NM_001014595; /// NM_001014596; /// NM_001014596; /// NM_001014597; /// NM_001014597; /// NM_001014598; /// NM_001014598; /// NM_079465; /// NM_079465; /// NM_141006; /// NM_168875; /// NM_168875; /// NM_168876; /// NM_168876; /// NM_168877; /// NM_168877;
Pathway : chitin-based cuticle // inferred from mutant phenotype /// 0008103 // oocyte microtubule cytoskeleton polarization // i
Interpro : 0005952 // cAMP-dependent protein kinase complex // inferred from electronic annotation /// 0005952 // cAMP-dependent pr
FlyMine data for FBgn0259243.
BioGrid reports that CG12452 interacts with CG5643 .
TRiP has 2 RNAi stocks for FBgn0259243 available for purchase.
VDRC has 4 RNAi stocks for FBgn0259243 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain12 23 of 411.40Up
Head1 00 of 4 0.80None
Eye2 00 of 4 1.82None
Thoracicoabdominal ganglion3 20 of 4 3.00None
Salivary gland4 10 of 4 3.73None
Crop1 00 of 4 1.20None
Midgut1 00 of 4 1.20None
Tubule1 00 of 4 1.00None
Hindgut0 00 of 4 0.80None
Heart3 00 of 4 3.11Up
Fat body1 00 of 4 1.24None
Ovary0 00 of 4 0.70None
Testis1 00 of 4 1.10None
Male accessory glands3 10 of 4 2.80None
Virgin spermatheca2 10 of 4 1.89None
Mated spermatheca1 00 of 4 0.91None
Adult carcass1 00 of 4 1.40None
Larval CNS1 00 of 4 1.04None
Larval Salivary gland0 00 of 4 0.78None
Larval midgut1 00 of 4 1.53None
Larval tubule0 00 of 4 0.70None
Larval hindgut0 00 of 4 0.60Down
Larval fat body1 00 of 4 1.20None
Larval trachea0 00 of 4 0.78None
Larval carcass1 00 of 4 0.91None
S2 cells (growing)0 00 of 4 0.38Down
Whole fly1 00 of 4

Looking for FBgn0259243. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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