FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0259244 through 18771 annotations produced 4 hits

CG11769 (CG42342):

Annotation Number : CG14888
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259244
Gbrowse : chr3R:12375758-12378280 (+) // 100.0 //
Probeset : 1635779_at
Accessions : protein= NP_001138061; /// NP_001138062; /// NP_001138063; /// NP_001138064; /// NP_001163631;, nucleotide= NM_001144589; /// NM_001144590; /// NM_001144591; /// NM_001144592; /// NM_001170160;
Pathway : encompassing mutualism through parasitism // inferred from direct assay"
Interpro : 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic an
FlyMine data for FBgn0259244.
TRiP has 1 RNAi stocks for FBgn0259244 available for purchase.
VDRC has 6 RNAi stocks for FBgn0259244 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	24 ± 1	4 of 4	15.30	Up
Head	6 ± 1	0 of 4	3.70	None
Eye	6 ± 1	0 of 4	4.25	Up
Thoracicoabdominal ganglion	20 ± 1	4 of 4	12.60	Up
Salivary gland	1 ± 0	0 of 4	0.92	None
Crop	1 ± 0	0 of 4	0.70	None
Midgut	2 ± 1	0 of 4	1.70	None
Tubule	3 ± 0	0 of 4	2.30	Up
Hindgut	2 ± 1	0 of 4	1.70	None
Heart	2 ± 0	0 of 4	1.72	None
Fat body	3 ± 3	0 of 4	2.20	None
Ovary	1 ± 0	0 of 4	1.00	None
Testis	2 ± 1	0 of 4	1.30	None
Male accessory glands	3 ± 1	0 of 4	2.00	None
Virgin spermatheca	5 ± 1	0 of 4	3.15	None
Mated spermatheca	4 ± 1	0 of 4	2.45	None
Adult carcass	1 ± 0	0 of 4	0.60	None
Larval CNS	12 ± 1	4 of 4	7.58	Up
Larval Salivary gland	3 ± 0	0 of 4	2.31	None
Larval midgut	2 ± 0	0 of 4	1.34	None
Larval tubule	0 ± 0	0 of 4	0.50	None
Larval hindgut	1 ± 0	0 of 4	0.95	None
Larval fat body	4 ± 1	0 of 4	3.00	None
Larval trachea	16 ± 3	1 of 4	9.98	Up
Larval carcass	2 ± 1	0 of 4	1.69	None
S2 cells (growing)	2 ± 1	0 of 4	1.38	None
Whole fly	1 ± 0	0 of 4

CG11769 (CG42342):

Annotation Number : CG14889
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259244
Gbrowse : chr3R:12381876-12394335 (+) // 100.0 //
Probeset : 1631471_at
Accessions : protein= NP_001138061; /// NP_001138062; /// NP_001138063; /// NP_001138064; /// NP_001163631;, nucleotide= NM_001144589; /// NM_001144590; /// NM_001144591; /// NM_001144592; /// NM_001170160;
Pathway : encompassing mutualism through parasitism // inferred from direct assay"
Interpro : 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic an
FlyMine data for FBgn0259244.
TRiP has 1 RNAi stocks for FBgn0259244 available for purchase.
VDRC has 6 RNAi stocks for FBgn0259244 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	374 ± 11	4 of 4	28.20	Up
Head	81 ± 9	4 of 4	6.20	Up
Eye	25 ± 1	4 of 4	1.89	Up
Thoracicoabdominal ganglion	436 ± 8	4 of 4	32.80	Up
Salivary gland	14 ± 2	2 of 4	1.07	None
Crop	4 ± 1	1 of 4	0.30	Down
Midgut	4 ± 0	0 of 4	0.30	Down
Tubule	2 ± 0	0 of 4	0.20	Down
Hindgut	3 ± 0	0 of 4	0.20	Down
Heart	2 ± 0	0 of 4	0.20	Down
Fat body	5 ± 0	3 of 4	0.39	Down
Ovary	1 ± 0	0 of 4	0.10	Down
Testis	4 ± 1	3 of 4	0.30	Down
Male accessory glands	6 ± 3	0 of 4	0.50	None
Virgin spermatheca	2 ± 0	0 of 4	0.19	Down
Mated spermatheca	2 ± 0	0 of 4	0.18	Down
Adult carcass	6 ± 0	0 of 4	0.50	Down
Larval CNS	492 ± 28	4 of 4	36.99	Up
Larval Salivary gland	5 ± 0	0 of 4	0.39	Down
Larval midgut	5 ± 0	2 of 4	0.39	Down
Larval tubule	4 ± 1	2 of 4	0.30	Down
Larval hindgut	4 ± 0	2 of 4	0.35	Down
Larval fat body	7 ± 2	3 of 4	0.50	None
Larval trachea	2 ± 0	0 of 4	0.22	Down
Larval carcass	6 ± 0	2 of 4	0.50	Down
S2 cells (growing)	1 ± 0	1 of 4	0.15	Down
Whole fly	13 ± 1	4 of 4

CG11769 (CG42342):

Annotation Number : CG11769
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259244
Gbrowse : chr3R:12339171-12339918 (+) // 100.0 //
Probeset : 1633321_at
Accessions : protein= NP_001138061; /// NP_001138062; /// NP_001138063; /// NP_001138064; /// NP_001163631;, nucleotide= NM_001144589; /// NM_001144590; /// NM_001144591; /// NM_001144592; /// NM_001170160;
Pathway : encompassing mutualism through parasitism // inferred from direct assay"
Interpro : 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic an
FlyMine data for FBgn0259244.
BioGrid reports that CG11769 interacts with CG17985 CG9769 CG13201 CG17271 CG18290 CG18362 CG3274 CG4303 CG4867 CG5094 CG5386 CG7548 CG7576 CG7658 CG9036 CG9184 .
TRiP has 1 RNAi stocks for FBgn0259244 available for purchase.
VDRC has 6 RNAi stocks for FBgn0259244 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	45 ± 1	4 of 4	12.40	Up
Head	19 ± 2	1 of 4	5.30	Up
Eye	6 ± 2	0 of 4	1.66	None
Thoracicoabdominal ganglion	56 ± 4	4 of 4	15.50	Up
Salivary gland	6 ± 2	0 of 4	1.74	None
Crop	5 ± 2	0 of 4	1.40	None
Midgut	2 ± 0	0 of 4	0.70	None
Tubule	4 ± 0	0 of 4	1.10	None
Hindgut	7 ± 2	0 of 4	2.10	None
Heart	2 ± 0	0 of 4	0.68	None
Fat body	3 ± 1	0 of 4	0.96	None
Ovary	2 ± 1	0 of 4	0.70	None
Testis	1 ± 0	0 of 4	0.50	None
Male accessory glands	7 ± 2	0 of 4	2.10	None
Virgin spermatheca	2 ± 0	0 of 4	0.54	None
Mated spermatheca	3 ± 1	0 of 4	0.86	None
Adult carcass	11 ± 4	0 of 4	3.20	None
Larval CNS	21 ± 1	3 of 4	5.76	Up
Larval Salivary gland	9 ± 1	0 of 4	2.52	None
Larval midgut	3 ± 0	0 of 4	1.03	None
Larval tubule	1 ± 0	0 of 4	0.50	None
Larval hindgut	4 ± 1	0 of 4	1.26	None
Larval fat body	1 ± 0	0 of 4	0.50	None
Larval trachea	11 ± 4	0 of 4	3.06	Up
Larval carcass	3 ± 0	0 of 4	0.88	None
S2 cells (growing)	2 ± 0	0 of 4	0.63	None
Whole fly	3 ± 1	0 of 4

CG11769 (CG42342):

Annotation Number : CG14890
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259244
Gbrowse : chr3R:12394665-12396133 (+) // 100.0 //
Probeset : 1639558_at
Accessions : protein= NP_001138061; /// NP_001138062; /// NP_001138063; /// NP_001138064; /// NP_001163631;, nucleotide= NM_001144589; /// NM_001144590; /// NM_001144591; /// NM_001144592; /// NM_001170160;
Pathway : encompassing mutualism through parasitism // inferred from direct assay"
Interpro : 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic an
FlyMine data for FBgn0259244.
TRiP has 1 RNAi stocks for FBgn0259244 available for purchase.
VDRC has 6 RNAi stocks for FBgn0259244 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	30 ± 3	4 of 4	16.80	Up
Head	10 ± 0	0 of 4	5.60	Up
Eye	4 ± 0	0 of 4	2.65	None
Thoracicoabdominal ganglion	31 ± 3	4 of 4	17.40	Up
Salivary gland	11 ± 4	0 of 4	6.46	None
Crop	1 ± 0	0 of 4	0.60	None
Midgut	3 ± 1	0 of 4	2.10	None
Tubule	4 ± 1	0 of 4	2.40	Up
Hindgut	2 ± 1	0 of 4	1.50	None
Heart	3 ± 1	0 of 4	1.74	None
Fat body	1 ± 0	0 of 4	0.83	None
Ovary	2 ± 0	0 of 4	1.30	None
Testis	2 ± 0	0 of 4	1.40	None
Male accessory glands	1 ± 0	0 of 4	1.10	None
Virgin spermatheca	5 ± 1	0 of 4	2.99	Up
Mated spermatheca	2 ± 0	0 of 4	1.40	None
Adult carcass	6 ± 3	0 of 4	3.80	None
Larval CNS	15 ± 2	2 of 4	8.65	Up
Larval Salivary gland	3 ± 0	0 of 4	1.86	None
Larval midgut	4 ± 1	0 of 4	2.46	None
Larval tubule	3 ± 1	0 of 4	1.60	None
Larval hindgut	4 ± 1	0 of 4	2.40	None
Larval fat body	1 ± 0	0 of 4	1.00	None
Larval trachea	6 ± 3	0 of 4	3.88	None
Larval carcass	6 ± 2	0 of 4	3.36	None
S2 cells (growing)	1 ± 0	0 of 4	0.56	None
Whole fly	1 ± 0	0 of 4

Looking for FBgn0259244. 4 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720