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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0259245 through 18771 annotations produced 3 hits



CG12564 (CG42343):

Annotation Number : CG12565
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259245
Gbrowse : chrX:21311789-21328761 (-) // 100.0 //
Probeset : 1627251_s_at
Accessions : protein= NP_001138225; /// NP_001138226; /// NP_608455; /// NP_728431;, nucleotide= NM_001144753; /// NM_001144754; /// NM_134611; /// NM_167755;
FlyMine data for FBgn0259245.
TRiP has 1 RNAi stocks for FBgn0259245 available for purchase.
VDRC has 3 RNAi stocks for FBgn0259245 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain9 ± 04 of 415.00Up
Head1 ± 10 of 4 2.90None
Eye2 ± 00 of 4 4.12None
Thoracicoabdominal ganglion3 ± 11 of 4 4.80None
Salivary gland7 ± 00 of 410.92Up
Crop0 ± 00 of 4 0.80None
Midgut0 ± 00 of 4 1.20None
Tubule2 ± 00 of 4 3.10Up
Hindgut2 ± 10 of 4 3.10None
Heart1 ± 00 of 4 1.58None
Fat body3 ± 30 of 4 5.08None
Ovary2 ± 00 of 4 3.30None
Testis1 ± 00 of 4 1.50None
Male accessory glands2 ± 10 of 4 4.20None
Virgin spermatheca3 ± 01 of 4 5.00None
Mated spermatheca3 ± 10 of 4 5.31None
Adult carcass1 ± 00 of 4 1.60None
Larval CNS4 ± 10 of 4 7.27Up
Larval Salivary gland4 ± 00 of 4 6.19Up
Larval midgut0 ± 00 of 4 1.15None
Larval tubule4 ± 10 of 4 6.10None
Larval hindgut2 ± 10 of 4 3.46None
Larval fat body4 ± 21 of 4 6.70None
Larval trachea3 ± 20 of 4 4.65None
Larval carcass2 ± 10 of 4 4.58None
S2 cells (growing)2 ± 00 of 4 3.69Up
Whole fly0 ± 00 of 4



CG12564 (CG42343):

Annotation Number : Stencil:X:21100497:21097000:GENSCAN
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259245
Gbrowse : chrX:21295614-21299111 (-) // 100.0 //
Probeset : 1639213_s_at
Accessions : protein= NP_001138225; /// NP_001138226; /// NP_608455; /// NP_728431;, nucleotide= NM_001144753; /// NM_001144754; /// NM_134611; /// NM_167755;
FlyMine data for FBgn0259245.
TRiP has 1 RNAi stocks for FBgn0259245 available for purchase.
VDRC has 3 RNAi stocks for FBgn0259245 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain13 ± 03 of 4 4.10Up
Head3 ± 10 of 4 1.00None
Eye3 ± 21 of 4 1.09None
Thoracicoabdominal ganglion5 ± 10 of 4 1.60None
Salivary gland11 ± 20 of 4 3.44None
Crop3 ± 10 of 4 1.00None
Midgut1 ± 00 of 4 0.40None
Tubule2 ± 00 of 4 0.80Down
Hindgut2 ± 00 of 4 0.70None
Heart2 ± 00 of 4 0.63None
Fat body6 ± 20 of 4 1.94None
Ovary1 ± 00 of 4 0.50None
Testis27 ± 54 of 4 8.30Up
Male accessory glands2 ± 10 of 4 0.70None
Virgin spermatheca2 ± 00 of 4 0.85None
Mated spermatheca1 ± 00 of 4 0.54None
Adult carcass4 ± 20 of 4 1.30None
Larval CNS3 ± 20 of 4 1.08None
Larval Salivary gland3 ± 10 of 4 0.95None
Larval midgut1 ± 10 of 4 0.54None
Larval tubule4 ± 00 of 4 1.50None
Larval hindgut1 ± 00 of 4 0.41None
Larval fat body3 ± 10 of 4 1.00None
Larval trachea3 ± 20 of 4 1.01None
Larval carcass2 ± 00 of 4 0.76None
S2 cells (growing)12 ± 00 of 4 3.84Up
Whole fly3 ± 00 of 4



CG12564 (CG42343):

Annotation Number : CG14583
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259245
Gbrowse : chrX:21302601-21303120 (-) // 100.0 //
Probeset : 1639693_at
Accessions : protein= NP_001138225; /// NP_001138226; /// NP_608455; /// NP_728431;, nucleotide= NM_001144753; /// NM_001144754; /// NM_134611; /// NM_167755;
FlyMine data for FBgn0259245.
TRiP has 1 RNAi stocks for FBgn0259245 available for purchase.
VDRC has 3 RNAi stocks for FBgn0259245 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 10 of 4 2.90None
Head0 ± 00 of 4 0.60None
Eye0 ± 00 of 4 0.50None
Thoracicoabdominal ganglion0 ± 00 of 4 0.90None
Salivary gland4 ± 20 of 4 4.60None
Crop2 ± 00 of 4 2.00None
Midgut2 ± 10 of 4 2.60None
Tubule1 ± 00 of 4 1.50None
Hindgut1 ± 10 of 4 1.80None
Heart1 ± 00 of 4 1.07None
Fat body0 ± 00 of 4 0.93None
Ovary0 ± 00 of 4 0.40None
Testis2 ± 10 of 4 2.50None
Male accessory glands3 ± 10 of 4 3.70None
Virgin spermatheca2 ± 10 of 4 2.00None
Mated spermatheca0 ± 00 of 4 0.90None
Adult carcass0 ± 00 of 4 0.90None
Larval CNS0 ± 00 of 4 0.58None
Larval Salivary gland3 ± 10 of 4 3.50None
Larval midgut3 ± 10 of 4 3.23None
Larval tubule0 ± 00 of 4 0.80None
Larval hindgut0 ± 00 of 4 0.53None
Larval fat body4 ± 10 of 4 4.80None
Larval trachea1 ± 20 of 4 1.73None
Larval carcass1 ± 00 of 4 1.00None
S2 cells (growing)4 ± 00 of 4 4.30Up
Whole fly1 ± 00 of 4

Looking for FBgn0259245. 3 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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