FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0259246 through 18771 annotations produced 4 hits

Bruchpilot (brp):

Annotation Number : CG12932
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259246
Gbrowse : chr2R:5410442-5411843 (+) // 100.0 //
Probeset : 1636216_at
Accessions : protein= NP_001036535; /// NP_001097241; /// NP_610493; /// NP_724796; /// NP_995785;, nucleotide= NM_001043070; /// NM_001043070; /// NM_001103771; /// NM_001103771; /// NM_136649; /// NM_165677; /// NM_165677; /// NM_206063; /// NM_206063;
Pathway : 0031594 // neuromuscular junction // inferred from direct assay /// 0042734 // presynaptic membrane // inferred from dir
Interpro : 0005262 // calcium channel activity // inferred from mutant phenotype
FlyMine data for FBgn0259246.
BioGrid reports that CG12932 interacts with CG3365 CG13700 CG13731 CG17666 CG17777 CG17956 CG30430 CG31226 CG32647 CG3510 CG5383 CG6322 CG7285 CG7570 CG8280 CG8854 CG8942 CG9184 CG9359 CG33103 .
TRiP has 1 RNAi stocks for FBgn0259246 available for purchase.
VDRC has 7 RNAi stocks for FBgn0259246 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	147 ± 9	4 of 4	90.60	Up
Head	7 ± 1	0 of 4	4.40	Up
Eye	46 ± 9	4 of 4	28.88	Up
Thoracicoabdominal ganglion	83 ± 7	4 of 4	51.50	Up
Salivary gland	3 ± 0	0 of 4	2.09	Up
Crop	1 ± 0	0 of 4	0.80	None
Midgut	7 ± 3	0 of 4	4.30	None
Tubule	1 ± 0	0 of 4	0.90	None
Hindgut	1 ± 0	0 of 4	0.60	None
Heart	1 ± 0	0 of 4	0.71	None
Fat body	1 ± 0	0 of 4	1.12	None
Ovary	0 ± 0	0 of 4	0.40	None
Testis	4 ± 1	0 of 4	2.40	None
Male accessory glands	2 ± 0	0 of 4	1.70	None
Virgin spermatheca	2 ± 0	0 of 4	1.51	None
Mated spermatheca	1 ± 0	0 of 4	0.80	None
Adult carcass	6 ± 4	0 of 4	4.10	None
Larval CNS	27 ± 6	4 of 4	17.00	Up
Larval Salivary gland	7 ± 2	0 of 4	4.48	None
Larval midgut	3 ± 0	0 of 4	2.06	Up
Larval tubule	2 ± 1	0 of 4	1.50	None
Larval hindgut	2 ± 0	0 of 4	1.58	None
Larval fat body	1 ± 0	0 of 4	0.80	None
Larval trachea	2 ± 2	0 of 4	1.38	None
Larval carcass	4 ± 1	0 of 4	2.83	None
S2 cells (growing)	1 ± 0	0 of 4	1.14	None
Whole fly	1 ± 0	0 of 4

Bruchpilot (brp):

Annotation Number : CG30337
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259246
Gbrowse : chr2R:5419850-5424980 (+) // 100.0 //
Probeset : 1625489_at
Accessions : protein= NP_001036535; /// NP_001097241; /// NP_610493; /// NP_724796; /// NP_995785;, nucleotide= NM_001043070; /// NM_001043070; /// NM_001103771; /// NM_001103771; /// NM_136649; /// NM_165677; /// NM_165677; /// NM_206063; /// NM_206063;
Pathway : 0031594 // neuromuscular junction // inferred from direct assay /// 0042734 // presynaptic membrane // inferred from dir
Interpro : 0005262 // calcium channel activity // inferred from mutant phenotype
FlyMine data for FBgn0259246.
TRiP has 1 RNAi stocks for FBgn0259246 available for purchase.
VDRC has 7 RNAi stocks for FBgn0259246 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	77 ± 1	4 of 4	11.20	Up
Head	12 ± 1	3 of 4	1.70	None
Eye	11 ± 0	3 of 4	1.63	None
Thoracicoabdominal ganglion	41 ± 6	4 of 4	6.00	Up
Salivary gland	8 ± 2	0 of 4	1.26	None
Crop	2 ± 0	0 of 4	0.30	None
Midgut	3 ± 1	1 of 4	0.50	None
Tubule	3 ± 0	0 of 4	0.40	Down
Hindgut	3 ± 0	0 of 4	0.50	None
Heart	2 ± 0	0 of 4	0.32	None
Fat body	3 ± 0	0 of 4	0.51	None
Ovary	2 ± 0	0 of 4	0.40	None
Testis	79 ± 4	4 of 4	11.50	Up
Male accessory glands	8 ± 3	1 of 4	1.20	None
Virgin spermatheca	1 ± 0	0 of 4	0.21	None
Mated spermatheca	2 ± 0	0 of 4	0.36	None
Adult carcass	11 ± 0	0 of 4	1.60	None
Larval CNS	32 ± 2	4 of 4	4.68	Up
Larval Salivary gland	4 ± 0	1 of 4	0.58	None
Larval midgut	4 ± 0	0 of 4	0.58	None
Larval tubule	1 ± 0	0 of 4	0.30	None
Larval hindgut	2 ± 1	0 of 4	0.35	None
Larval fat body	12 ± 6	2 of 4	1.80	None
Larval trachea	3 ± 2	0 of 4	0.54	None
Larval carcass	1 ± 0	0 of 4	0.18	None
S2 cells (growing)	82 ± 3	4 of 4	11.95	Up
Whole fly	6 ± 2	1 of 4

Bruchpilot (brp):

Annotation Number : CG30336
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259246
Gbrowse : chr2R:5414687-5416417 (+) // 100.0 //
Probeset : 1629132_at
Accessions : protein= NP_001036535; /// NP_001097241; /// NP_610493; /// NP_724796; /// NP_995785;, nucleotide= NM_001043070; /// NM_001043070; /// NM_001103771; /// NM_001103771; /// NM_136649; /// NM_165677; /// NM_165677; /// NM_206063; /// NM_206063;
Pathway : 0031594 // neuromuscular junction // inferred from direct assay /// 0042734 // presynaptic membrane // inferred from dir
Interpro : 0005262 // calcium channel activity // inferred from mutant phenotype
FlyMine data for FBgn0259246.
BioGrid reports that CG30336 interacts with CG9986 .
TRiP has 1 RNAi stocks for FBgn0259246 available for purchase.
VDRC has 7 RNAi stocks for FBgn0259246 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	12 ± 0	4 of 4	2.50	None
Head	6 ± 1	1 of 4	1.30	None
Eye	7 ± 0	1 of 4	1.55	Up
Thoracicoabdominal ganglion	8 ± 0	2 of 4	1.60	Up
Salivary gland	14 ± 4	0 of 4	2.80	None
Crop	2 ± 1	0 of 4	0.50	None
Midgut	7 ± 1	0 of 4	1.40	None
Tubule	6 ± 0	0 of 4	1.30	Up
Hindgut	6 ± 1	3 of 4	1.30	None
Heart	1 ± 0	0 of 4	0.28	Down
Fat body	10 ± 2	1 of 4	1.96	Up
Ovary	3 ± 0	0 of 4	0.70	None
Testis	1 ± 0	0 of 4	0.20	Down
Male accessory glands	10 ± 3	1 of 4	2.00	None
Virgin spermatheca	7 ± 0	0 of 4	1.46	Up
Mated spermatheca	5 ± 1	1 of 4	1.03	None
Adult carcass	1 ± 0	0 of 4	0.40	Down
Larval CNS	6 ± 0	4 of 4	1.18	None
Larval Salivary gland	14 ± 2	3 of 4	2.76	Up
Larval midgut	4 ± 0	0 of 4	0.89	None
Larval tubule	6 ± 1	0 of 4	1.40	None
Larval hindgut	7 ± 1	4 of 4	1.43	None
Larval fat body	12 ± 1	2 of 4	2.50	Up
Larval trachea	6 ± 0	3 of 4	1.28	Up
Larval carcass	6 ± 0	1 of 4	1.35	None
S2 cells (growing)	7 ± 0	2 of 4	1.40	Up
Whole fly	5 ± 0	1 of 4

Bruchpilot (brp):

Annotation Number : CG12933
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259246
Gbrowse : chr2R:5397394-5399055 (+) // 100.0 //
Probeset : 1632538_at
Accessions : protein= NP_001036535; /// NP_001097241; /// NP_610493; /// NP_724796; /// NP_995785;, nucleotide= NM_001043070; /// NM_001043070; /// NM_001103771; /// NM_001103771; /// NM_136649; /// NM_165677; /// NM_165677; /// NM_206063; /// NM_206063;
Pathway : 0031594 // neuromuscular junction // inferred from direct assay /// 0042734 // presynaptic membrane // inferred from dir
Interpro : 0005262 // calcium channel activity // inferred from mutant phenotype
FlyMine data for FBgn0259246.
TRiP has 1 RNAi stocks for FBgn0259246 available for purchase.
VDRC has 7 RNAi stocks for FBgn0259246 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	8 ± 2	0 of 4	3.30	None
Head	1 ± 1	0 of 4	0.70	None
Eye	2 ± 1	0 of 4	1.03	None
Thoracicoabdominal ganglion	8 ± 0	0 of 4	3.10	None
Salivary gland	5 ± 2	0 of 4	2.08	None
Crop	0 ± 0	0 of 4	0.30	None
Midgut	2 ± 0	0 of 4	0.90	None
Tubule	5 ± 1	0 of 4	2.20	Up
Hindgut	1 ± 0	0 of 4	0.50	None
Heart	1 ± 1	0 of 4	0.67	None
Fat body	1 ± 1	0 of 4	0.66	None
Ovary	0 ± 0	0 of 4	0.20	None
Testis	0 ± 0	0 of 4	0.30	None
Male accessory glands	1 ± 0	0 of 4	0.60	None
Virgin spermatheca	1 ± 0	0 of 4	0.51	None
Mated spermatheca	1 ± 0	0 of 4	0.41	None
Adult carcass	1 ± 0	0 of 4	0.50	None
Larval CNS	1 ± 0	0 of 4	0.50	None
Larval Salivary gland	1 ± 0	0 of 4	0.46	None
Larval midgut	0 ± 0	0 of 4	0.32	None
Larval tubule	0 ± 0	0 of 4	0.20	None
Larval hindgut	2 ± 1	0 of 4	0.74	None
Larval fat body	3 ± 2	0 of 4	1.20	None
Larval trachea	1 ± 0	0 of 4	0.42	None
Larval carcass	0 ± 0	0 of 4	0.31	None
S2 cells (growing)	0 ± 0	0 of 4	0.19	None
Whole fly	2 ± 2	0 of 4

Looking for FBgn0259246. 4 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720