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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0259246 through 18771 annotations produced 4 hits



Bruchpilot (brp):

Annotation Number : CG30337
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259246
Gbrowse : chr2R:5419850-5424980 (+) // 100.0 //
Probeset : 1625489_at
Accessions : protein= NP_001036535; /// NP_001097241; /// NP_610493; /// NP_724796; /// NP_995785;, nucleotide= NM_001043070; /// NM_001043070; /// NM_001103771; /// NM_001103771; /// NM_136649; /// NM_165677; /// NM_165677; /// NM_206063; /// NM_206063;
Pathway : 0031594 // neuromuscular junction // inferred from direct assay /// 0042734 // presynaptic membrane // inferred from dir
Interpro : 0005262 // calcium channel activity // inferred from mutant phenotype
FlyMine data for FBgn0259246.
TRiP has 1 RNAi stocks for FBgn0259246 available for purchase.
VDRC has 7 RNAi stocks for FBgn0259246 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain77 14 of 411.20Up
Head12 13 of 4 1.70None
Eye11 03 of 4 1.63None
Thoracicoabdominal ganglion41 64 of 4 6.00Up
Salivary gland8 20 of 4 1.26None
Crop2 00 of 4 0.30None
Midgut3 11 of 4 0.50None
Tubule3 00 of 4 0.40Down
Hindgut3 00 of 4 0.50None
Heart2 00 of 4 0.32None
Fat body3 00 of 4 0.51None
Ovary2 00 of 4 0.40None
Testis79 44 of 411.50Up
Male accessory glands8 31 of 4 1.20None
Virgin spermatheca1 00 of 4 0.21None
Mated spermatheca2 00 of 4 0.36None
Adult carcass11 00 of 4 1.60None
Larval CNS32 24 of 4 4.68Up
Larval Salivary gland4 01 of 4 0.58None
Larval midgut4 00 of 4 0.58None
Larval tubule1 00 of 4 0.30None
Larval hindgut2 10 of 4 0.35None
Larval fat body12 62 of 4 1.80None
Larval trachea3 20 of 4 0.54None
Larval carcass1 00 of 4 0.18None
S2 cells (growing)82 34 of 411.95Up
Whole fly6 21 of 4



Bruchpilot (brp):

Annotation Number : CG30336
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259246
Gbrowse : chr2R:5414687-5416417 (+) // 100.0 //
Probeset : 1629132_at
Accessions : protein= NP_001036535; /// NP_001097241; /// NP_610493; /// NP_724796; /// NP_995785;, nucleotide= NM_001043070; /// NM_001043070; /// NM_001103771; /// NM_001103771; /// NM_136649; /// NM_165677; /// NM_165677; /// NM_206063; /// NM_206063;
Pathway : 0031594 // neuromuscular junction // inferred from direct assay /// 0042734 // presynaptic membrane // inferred from dir
Interpro : 0005262 // calcium channel activity // inferred from mutant phenotype
FlyMine data for FBgn0259246.
BioGrid reports that CG30336 interacts with CG9986 .
TRiP has 1 RNAi stocks for FBgn0259246 available for purchase.
VDRC has 7 RNAi stocks for FBgn0259246 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain12 04 of 4 2.50None
Head6 11 of 4 1.30None
Eye7 01 of 4 1.55Up
Thoracicoabdominal ganglion8 02 of 4 1.60Up
Salivary gland14 40 of 4 2.80None
Crop2 10 of 4 0.50None
Midgut7 10 of 4 1.40None
Tubule6 00 of 4 1.30Up
Hindgut6 13 of 4 1.30None
Heart1 00 of 4 0.28Down
Fat body10 21 of 4 1.96Up
Ovary3 00 of 4 0.70None
Testis1 00 of 4 0.20Down
Male accessory glands10 31 of 4 2.00None
Virgin spermatheca7 00 of 4 1.46Up
Mated spermatheca5 11 of 4 1.03None
Adult carcass1 00 of 4 0.40Down
Larval CNS6 04 of 4 1.18None
Larval Salivary gland14 23 of 4 2.76Up
Larval midgut4 00 of 4 0.89None
Larval tubule6 10 of 4 1.40None
Larval hindgut7 14 of 4 1.43None
Larval fat body12 12 of 4 2.50Up
Larval trachea6 03 of 4 1.28Up
Larval carcass6 01 of 4 1.35None
S2 cells (growing)7 02 of 4 1.40Up
Whole fly5 01 of 4



Bruchpilot (brp):

Annotation Number : CG12932
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259246
Gbrowse : chr2R:5410442-5411843 (+) // 100.0 //
Probeset : 1636216_at
Accessions : protein= NP_001036535; /// NP_001097241; /// NP_610493; /// NP_724796; /// NP_995785;, nucleotide= NM_001043070; /// NM_001043070; /// NM_001103771; /// NM_001103771; /// NM_136649; /// NM_165677; /// NM_165677; /// NM_206063; /// NM_206063;
Pathway : 0031594 // neuromuscular junction // inferred from direct assay /// 0042734 // presynaptic membrane // inferred from dir
Interpro : 0005262 // calcium channel activity // inferred from mutant phenotype
FlyMine data for FBgn0259246.
BioGrid reports that CG12932 interacts with CG3365 CG13700 CG13731 CG17666 CG17777 CG17956 CG30430 CG31226 CG32647 CG3510 CG5383 CG6322 CG7285 CG7570 CG8280 CG8854 CG8942 CG9184 CG9359 CG33103 .
TRiP has 1 RNAi stocks for FBgn0259246 available for purchase.
VDRC has 7 RNAi stocks for FBgn0259246 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain147 94 of 490.60Up
Head7 10 of 4 4.40Up
Eye46 94 of 428.88Up
Thoracicoabdominal ganglion83 74 of 451.50Up
Salivary gland3 00 of 4 2.09Up
Crop1 00 of 4 0.80None
Midgut7 30 of 4 4.30None
Tubule1 00 of 4 0.90None
Hindgut1 00 of 4 0.60None
Heart1 00 of 4 0.71None
Fat body1 00 of 4 1.12None
Ovary0 00 of 4 0.40None
Testis4 10 of 4 2.40None
Male accessory glands2 00 of 4 1.70None
Virgin spermatheca2 00 of 4 1.51None
Mated spermatheca1 00 of 4 0.80None
Adult carcass6 40 of 4 4.10None
Larval CNS27 64 of 417.00Up
Larval Salivary gland7 20 of 4 4.48None
Larval midgut3 00 of 4 2.06Up
Larval tubule2 10 of 4 1.50None
Larval hindgut2 00 of 4 1.58None
Larval fat body1 00 of 4 0.80None
Larval trachea2 20 of 4 1.38None
Larval carcass4 10 of 4 2.83None
S2 cells (growing)1 00 of 4 1.14None
Whole fly1 00 of 4



Bruchpilot (brp):

Annotation Number : CG12933
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259246
Gbrowse : chr2R:5397394-5399055 (+) // 100.0 //
Probeset : 1632538_at
Accessions : protein= NP_001036535; /// NP_001097241; /// NP_610493; /// NP_724796; /// NP_995785;, nucleotide= NM_001043070; /// NM_001043070; /// NM_001103771; /// NM_001103771; /// NM_136649; /// NM_165677; /// NM_165677; /// NM_206063; /// NM_206063;
Pathway : 0031594 // neuromuscular junction // inferred from direct assay /// 0042734 // presynaptic membrane // inferred from dir
Interpro : 0005262 // calcium channel activity // inferred from mutant phenotype
FlyMine data for FBgn0259246.
TRiP has 1 RNAi stocks for FBgn0259246 available for purchase.
VDRC has 7 RNAi stocks for FBgn0259246 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 20 of 4 3.30None
Head1 10 of 4 0.70None
Eye2 10 of 4 1.03None
Thoracicoabdominal ganglion8 00 of 4 3.10None
Salivary gland5 20 of 4 2.08None
Crop0 00 of 4 0.30None
Midgut2 00 of 4 0.90None
Tubule5 10 of 4 2.20Up
Hindgut1 00 of 4 0.50None
Heart1 10 of 4 0.67None
Fat body1 10 of 4 0.66None
Ovary0 00 of 4 0.20None
Testis0 00 of 4 0.30None
Male accessory glands1 00 of 4 0.60None
Virgin spermatheca1 00 of 4 0.51None
Mated spermatheca1 00 of 4 0.41None
Adult carcass1 00 of 4 0.50None
Larval CNS1 00 of 4 0.50None
Larval Salivary gland1 00 of 4 0.46None
Larval midgut0 00 of 4 0.32None
Larval tubule0 00 of 4 0.20None
Larval hindgut2 10 of 4 0.74None
Larval fat body3 20 of 4 1.20None
Larval trachea1 00 of 4 0.42None
Larval carcass0 00 of 4 0.31None
S2 cells (growing)0 00 of 4 0.19None
Whole fly2 20 of 4

Looking for FBgn0259246. 4 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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