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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0259247 through 18771 annotations produced 3 hits



CG30437 (CG42345):

Annotation Number : CG32838
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259247
Gbrowse : chr2R:1341942-1342518 (+) // 100.0 //
Probeset : 1625774_at
Accessions : protein= NP_001137606; /// NP_610170; /// NP_724412; /// NP_724413;, nucleotide= NM_001144134; /// NM_136326; /// NM_165431; /// NM_165432;
Interpro : 0005507 // copper ion binding // inferred from electronic annotation /// 0008471 // laccase activity // inferred from se
FlyMine data for FBgn0259247.
VDRC has 6 RNAi stocks for FBgn0259247 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 21 of 4 0.70None
Head9 ± 21 of 4 1.70None
Eye12 ± 23 of 4 2.36None
Thoracicoabdominal ganglion3 ± 10 of 4 0.70None
Salivary gland18 ± 51 of 4 3.53None
Crop8 ± 10 of 4 1.70None
Midgut5 ± 10 of 4 1.10None
Tubule5 ± 10 of 4 0.90None
Hindgut7 ± 00 of 4 1.40None
Heart4 ± 00 of 4 0.80None
Fat body10 ± 41 of 4 1.99None
Ovary3 ± 10 of 4 0.60None
Testis4 ± 00 of 4 0.80None
Male accessory glands7 ± 10 of 4 1.40None
Virgin spermatheca5 ± 10 of 4 1.03None
Mated spermatheca8 ± 21 of 4 1.57None
Adult carcass8 ± 10 of 4 1.60None
Larval CNS2 ± 20 of 4 0.51None
Larval Salivary gland4 ± 10 of 4 0.89None
Larval midgut9 ± 12 of 4 1.78None
Larval tubule6 ± 10 of 4 1.20None
Larval hindgut4 ± 10 of 4 0.81None
Larval fat body5 ± 10 of 4 1.00None
Larval trachea6 ± 11 of 4 1.29None
Larval carcass3 ± 10 of 4 0.76None
S2 cells (growing)5 ± 11 of 4 1.04None
Whole fly5 ± 10 of 4



CG30437 (CG42345):

Annotation Number : CG30437
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259247
Gbrowse : chr2R:1301240-1341656 (+) // 100.0 //
Probeset : 1632561_at
Accessions : protein= NP_001137606; /// NP_610170; /// NP_724412; /// NP_724413;, nucleotide= NM_001144134; /// NM_136326; /// NM_165431; /// NM_165432;
Interpro : 0005507 // copper ion binding // inferred from electronic annotation /// 0008471 // laccase activity // inferred from se
FlyMine data for FBgn0259247.
BioGrid reports that CG30437 interacts with CG8276 .
VDRC has 6 RNAi stocks for FBgn0259247 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 1.20None
Head4 ± 10 of 4 1.60None
Eye4 ± 01 of 4 1.84None
Thoracicoabdominal ganglion5 ± 10 of 4 2.30None
Salivary gland6 ± 40 of 4 2.61None
Crop3 ± 10 of 4 1.40None
Midgut8 ± 00 of 4 3.30Up
Tubule2 ± 00 of 4 1.20None
Hindgut5 ± 10 of 4 2.00None
Heart0 ± 00 of 4 0.35None
Fat body3 ± 30 of 4 1.43None
Ovary1 ± 00 of 4 0.60None
Testis3 ± 00 of 4 1.30None
Male accessory glands6 ± 00 of 4 2.60Up
Virgin spermatheca1 ± 00 of 4 0.52None
Mated spermatheca3 ± 10 of 4 1.44None
Adult carcass6 ± 20 of 4 2.60None
Larval CNS1 ± 10 of 4 0.66None
Larval Salivary gland3 ± 00 of 4 1.43None
Larval midgut2 ± 00 of 4 1.06None
Larval tubule4 ± 10 of 4 1.80None
Larval hindgut2 ± 00 of 4 1.09None
Larval fat body1 ± 00 of 4 0.50None
Larval trachea3 ± 12 of 4 1.61None
Larval carcass2 ± 00 of 4 1.19None
S2 cells (growing)5 ± 01 of 4 2.35Up
Whole fly2 ± 00 of 4



CG30437 (CG42345):

Annotation Number : CG30437
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259247
Gbrowse : chr2R:1301240-1335482 (+) // 100.0 //
Probeset : 1630430_a_at
Accessions : protein= NP_001137606; /// NP_610170; /// NP_724412; /// NP_724413;, nucleotide= NM_001144134; /// NM_136326; /// NM_165431; /// NM_165432;
Interpro : 0005507 // copper ion binding // inferred from electronic annotation /// 0008471 // laccase activity // inferred from se
FlyMine data for FBgn0259247.
BioGrid reports that CG30437 interacts with CG8276 .
VDRC has 6 RNAi stocks for FBgn0259247 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 ± 04 of 4 0.20Down
Head151 ± 104 of 4 3.30Up
Eye62 ± 44 of 4 1.37Up
Thoracicoabdominal ganglion10 ± 14 of 4 0.20Down
Salivary gland77 ± 84 of 4 1.69Up
Crop171 ± 174 of 4 3.80Up
Midgut5 ± 11 of 4 0.10Down
Tubule4 ± 00 of 4 0.10Down
Hindgut166 ± 74 of 4 3.60Up
Heart11 ± 53 of 4 0.25Down
Fat body21 ± 74 of 4 0.47Down
Ovary37 ± 24 of 4 0.80None
Testis13 ± 14 of 4 0.30Down
Male accessory glands63 ± 44 of 4 1.40Up
Virgin spermatheca27 ± 14 of 4 0.59Down
Mated spermatheca32 ± 44 of 4 0.71None
Adult carcass86 ± 44 of 4 1.90Up
Larval CNS22 ± 44 of 4 0.49Down
Larval Salivary gland30 ± 34 of 4 0.67Down
Larval midgut19 ± 14 of 4 0.42Down
Larval tubule7 ± 13 of 4 0.20Down
Larval hindgut166 ± 134 of 4 3.66Up
Larval fat body24 ± 14 of 4 0.50Down
Larval trachea1112 ± 504 of 424.46Up
Larval carcass1591 ± 1794 of 434.98Up
S2 cells (growing)125 ± 44 of 4 2.76Up
Whole fly45 ± 44 of 4

Looking for FBgn0259247. 3 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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