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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0259481 through 18771 annotations produced 1 hits


Mob2 (Mob2):

Annotation Number : CG11711
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259481
Gbrowse : chr3L:11515856-11555333 (-) // 100.0 //
Probeset : 1640774_a_at
Accessions : protein= NP_648474; /// NP_729714; /// NP_729715; /// NP_729716;, nucleotide= NM_140217; /// NM_168460; /// NM_168461; /// NM_168462;
Pathway : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 00057
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // inferred from electro
FlyMine data for FBgn0259481.
BioGrid reports that CG11711 interacts with Dmel CG34168 CG8942 CG13434 CG13711 CG1422 CG15481 CG15580 CG1567 CG17377 CG17835 CG17956 CG1921 CG2033 CG31869 CG32711 CG3283 CG3557 CG4865 CG5693 CG6779 CG6996 CG9016 CG9572 CG31094 Dmel CR14499 CG1630 .
VDRC has 1 RNAi stocks for FBgn0259481 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain964 ± 414 of 4 8.70Up
Head1089 ± 684 of 4 9.80Up
Eye3543 ± 2394 of 431.79Up
Thoracicoabdominal ganglion1131 ± 154 of 410.20Up
Salivary gland16 ± 50 of 4 0.14Down
Crop12 ± 20 of 4 0.10Down
Midgut8 ± 10 of 4 0.10Down
Tubule10 ± 01 of 4 0.10Down
Hindgut14 ± 00 of 4 0.10Down
Heart9 ± 00 of 4 0.09Down
Fat body42 ± 103 of 4 0.38Down
Ovary1 ± 00 of 4 0.00Down
Testis3 ± 00 of 4 0.00Down
Male accessory glands19 ± 60 of 4 0.20Down
Virgin spermatheca26 ± 32 of 4 0.24Down
Mated spermatheca32 ± 112 of 4 0.29Down
Adult carcass29 ± 33 of 4 0.30Down
Larval CNS377 ± 364 of 4 3.39Up
Larval Salivary gland10 ± 10 of 4 0.10Down
Larval midgut10 ± 00 of 4 0.09Down
Larval tubule11 ± 11 of 4 0.10Down
Larval hindgut12 ± 10 of 4 0.11Down
Larval fat body9 ± 42 of 4 0.10Down
Larval trachea96 ± 1643 of 4 0.87None
Larval carcass13 ± 00 of 4 0.12Down
S2 cells (growing)10 ± 00 of 4 0.10Down
Whole fly111 ± 44 of 4

Looking for FBgn0259481. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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