FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0259678 through 18771 annotations produced 2 hits

MLCK-like (CG42347):

Annotation Number : CG1776
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259678
Gbrowse : chr2R:5606143-5632778 (-) // 100.0 //
Probeset : 1633881_at
Accessions : protein= NP_610514; /// NP_724821;, nucleotide= NM_136670; /// NM_165693; /// NM_165693;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred
FlyMine data for FBgn0259678.
Homophila reports that CG1776 is a close match (3e-11) to human gene LRRK2;PARK8 (NP_940980), a gene associated with Parkinson disease-8, 607060 (3).
TRiP has 1 RNAi stocks for FBgn0259678 available for purchase.
VDRC has 5 RNAi stocks for FBgn0259678 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	7 ± 1	1 of 4	0.10	Down
Head	31 ± 3	4 of 4	0.40	Down
Eye	41 ± 2	4 of 4	0.49	Down
Thoracicoabdominal ganglion	18 ± 2	4 of 4	0.20	Down
Salivary gland	31 ± 1	3 of 4	0.37	Down
Crop	104 ± 5	4 of 4	1.20	Up
Midgut	597 ± 9	4 of 4	7.00	Up
Tubule	44 ± 7	4 of 4	0.50	Down
Hindgut	178 ± 5	4 of 4	2.10	Up
Heart	66 ± 4	4 of 4	0.79	Down
Fat body	17 ± 7	1 of 4	0.20	Down
Ovary	4 ± 0	0 of 4	0.10	Down
Testis	5 ± 1	1 of 4	0.10	Down
Male accessory glands	23 ± 3	4 of 4	0.30	Down
Virgin spermatheca	24 ± 2	2 of 4	0.29	Down
Mated spermatheca	26 ± 4	4 of 4	0.31	Down
Adult carcass	237 ± 9	4 of 4	2.80	Up
Larval CNS	8 ± 3	2 of 4	0.10	Down
Larval Salivary gland	16 ± 3	1 of 4	0.20	Down
Larval midgut	316 ± 16	4 of 4	3.72	Up
Larval tubule	96 ± 4	4 of 4	1.10	None
Larval hindgut	146 ± 12	4 of 4	1.73	Up
Larval fat body	5 ± 2	0 of 4	0.10	Down
Larval trachea	6 ± 4	0 of 4	0.08	Down
Larval carcass	256 ± 41	4 of 4	3.03	Up
S2 cells (growing)	5 ± 1	0 of 4	0.06	Down
Whole fly	84 ± 5	4 of 4

MLCK-like (CG42347):

Annotation Number : CG30004
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259678
Gbrowse : chr2R:5604023-5605400 (-) // 100.0 //
Probeset : 1636414_at
Accessions : protein= NP_610514; /// NP_724821;, nucleotide= NM_136670; /// NM_165693; /// NM_165693;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred
FlyMine data for FBgn0259678.
TRiP has 1 RNAi stocks for FBgn0259678 available for purchase.
VDRC has 5 RNAi stocks for FBgn0259678 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	2 ± 0	0 of 4	0.00	Down
Head	33 ± 4	4 of 4	0.70	None
Eye	34 ± 2	4 of 4	0.76	None
Thoracicoabdominal ganglion	4 ± 1	0 of 4	0.10	Down
Salivary gland	17 ± 6	0 of 4	0.37	Down
Crop	283 ± 11	4 of 4	6.20	Up
Midgut	68 ± 2	4 of 4	1.50	Up
Tubule	6 ± 1	0 of 4	0.10	Down
Hindgut	111 ± 4	4 of 4	2.40	Up
Heart	41 ± 2	4 of 4	0.91	None
Fat body	1 ± 0	0 of 4	0.04	Down
Ovary	3 ± 1	0 of 4	0.10	Down
Testis	9 ± 1	0 of 4	0.20	Down
Male accessory glands	57 ± 1	4 of 4	1.20	Up
Virgin spermatheca	7 ± 1	0 of 4	0.16	Down
Mated spermatheca	7 ± 2	0 of 4	0.17	Down
Adult carcass	176 ± 5	4 of 4	3.90	Up
Larval CNS	1 ± 1	0 of 4	0.04	Down
Larval Salivary gland	7 ± 2	0 of 4	0.16	Down
Larval midgut	31 ± 1	2 of 4	0.68	Down
Larval tubule	13 ± 1	1 of 4	0.30	Down
Larval hindgut	76 ± 2	4 of 4	1.68	Up
Larval fat body	9 ± 3	0 of 4	0.20	Down
Larval trachea	6 ± 3	0 of 4	0.15	Down
Larval carcass	102 ± 4	4 of 4	2.25	Up
S2 cells (growing)	0 ± 0	0 of 4	0.02	Down
Whole fly	45 ± 3	4 of 4

Looking for FBgn0259678. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720