FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0259682 through 18771 annotations produced 2 hits

CG15092 (CG42351):

Annotation Number : Stencil:2R:13821862:13820911:GENSCAN
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259682
Gbrowse : chr2R:14644696-14645647 (-) // 100.0 //
Probeset : 1640505_at
Accessions : protein= NP_001137703; /// NP_001137704; /// NP_001137705; /// NP_611371;, nucleotide= NM_001144231; /// NM_001144232; /// NM_001144233; /// NM_137527;
Pathway : 0005811 // lipid particle // inferred from direct assay
FlyMine data for FBgn0259682.
TRiP has 1 RNAi stocks for FBgn0259682 available for purchase.
VDRC has 3 RNAi stocks for FBgn0259682 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	12 ± 2	1 of 4	0.10	Down
Head	261 ± 20	4 of 4	1.70	Up
Eye	68 ± 7	4 of 4	0.46	Down
Thoracicoabdominal ganglion	28 ± 1	3 of 4	0.20	Down
Salivary gland	12 ± 5	0 of 4	0.08	Down
Crop	108 ± 3	4 of 4	0.70	Down
Midgut	3 ± 1	0 of 4	0.00	Down
Tubule	8 ± 2	0 of 4	0.10	Down
Hindgut	78 ± 1	4 of 4	0.50	Down
Heart	328 ± 20	4 of 4	2.18	Up
Fat body	1053 ± 224	4 of 4	7.00	Up
Ovary	56 ± 7	4 of 4	0.40	Down
Testis	20 ± 1	3 of 4	0.10	Down
Male accessory glands	5 ± 2	0 of 4	0.00	Down
Virgin spermatheca	188 ± 17	4 of 4	1.26	None
Mated spermatheca	288 ± 34	4 of 4	1.92	Up
Adult carcass	394 ± 16	4 of 4	2.60	Up
Larval CNS	6 ± 0	0 of 4	0.05	Down
Larval Salivary gland	26 ± 5	1 of 4	0.18	Down
Larval midgut	2 ± 0	0 of 4	0.01	Down
Larval tubule	2 ± 1	0 of 4	0.00	Down
Larval hindgut	23 ± 4	3 of 4	0.16	Down
Larval fat body	652 ± 58	4 of 4	4.30	Up
Larval trachea	34 ± 6	4 of 4	0.23	Down
Larval carcass	8 ± 2	0 of 4	0.06	Down
S2 cells (growing)	1 ± 0	0 of 4	0.01	Down
Whole fly	150 ± 10	4 of 4

CG15092 (CG42351):

Annotation Number : CG15092
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259682
Gbrowse : chr2R:14645802-14648577 (-) // 100.0 //
Probeset : 1633076_at
Accessions : protein= NP_001137703; /// NP_001137704; /// NP_001137705; /// NP_611371;, nucleotide= NM_001144231; /// NM_001144232; /// NM_001144233; /// NM_137527;
Pathway : 0005811 // lipid particle // inferred from direct assay
FlyMine data for FBgn0259682.
TRiP has 1 RNAi stocks for FBgn0259682 available for purchase.
VDRC has 3 RNAi stocks for FBgn0259682 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	63 ± 3	4 of 4	0.10	Down
Head	482 ± 7	4 of 4	0.50	Down
Eye	235 ± 34	4 of 4	0.23	Down
Thoracicoabdominal ganglion	104 ± 4	4 of 4	0.10	Down
Salivary gland	24 ± 4	1 of 4	0.02	Down
Crop	464 ± 31	4 of 4	0.50	Down
Midgut	24 ± 3	0 of 4	0.00	Down
Tubule	49 ± 25	1 of 4	0.00	Down
Hindgut	158 ± 6	4 of 4	0.20	Down
Heart	879 ± 60	4 of 4	0.86	None
Fat body	1468 ± 374	4 of 4	1.43	None
Ovary	1709 ± 36	4 of 4	1.70	Up
Testis	45 ± 4	4 of 4	0.00	Down
Male accessory glands	24 ± 3	2 of 4	0.00	Down
Virgin spermatheca	504 ± 42	4 of 4	0.49	Down
Mated spermatheca	893 ± 73	4 of 4	0.87	None
Adult carcass	727 ± 27	4 of 4	0.70	Down
Larval CNS	36 ± 3	4 of 4	0.04	Down
Larval Salivary gland	69 ± 5	4 of 4	0.07	Down
Larval midgut	25 ± 3	0 of 4	0.03	Down
Larval tubule	31 ± 2	3 of 4	0.00	Down
Larval hindgut	41 ± 5	4 of 4	0.04	Down
Larval fat body	1426 ± 127	4 of 4	1.40	Up
Larval trachea	120 ± 27	4 of 4	0.12	Down
Larval carcass	34 ± 3	2 of 4	0.03	Down
S2 cells (growing)	23 ± 2	1 of 4	0.02	Down
Whole fly	1024 ± 67	4 of 4

Looking for FBgn0259682. 2 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720