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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0259682 through 18771 annotations produced 2 hits



CG15092 (CG42351):

Annotation Number : Stencil:2R:13821862:13820911:GENSCAN
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259682
Gbrowse : chr2R:14644696-14645647 (-) // 100.0 //
Probeset : 1640505_at
Accessions : protein= NP_001137703; /// NP_001137704; /// NP_001137705; /// NP_611371;, nucleotide= NM_001144231; /// NM_001144232; /// NM_001144233; /// NM_137527;
Pathway : 0005811 // lipid particle // inferred from direct assay
FlyMine data for FBgn0259682.
TRiP has 1 RNAi stocks for FBgn0259682 available for purchase.
VDRC has 3 RNAi stocks for FBgn0259682 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain12 21 of 4 0.10Down
Head261 204 of 4 1.70Up
Eye68 74 of 4 0.46Down
Thoracicoabdominal ganglion28 13 of 4 0.20Down
Salivary gland12 50 of 4 0.08Down
Crop108 34 of 4 0.70Down
Midgut3 10 of 4 0.00Down
Tubule8 20 of 4 0.10Down
Hindgut78 14 of 4 0.50Down
Heart328 204 of 4 2.18Up
Fat body1053 2244 of 4 7.00Up
Ovary56 74 of 4 0.40Down
Testis20 13 of 4 0.10Down
Male accessory glands5 20 of 4 0.00Down
Virgin spermatheca188 174 of 4 1.26None
Mated spermatheca288 344 of 4 1.92Up
Adult carcass394 164 of 4 2.60Up
Larval CNS6 00 of 4 0.05Down
Larval Salivary gland26 51 of 4 0.18Down
Larval midgut2 00 of 4 0.01Down
Larval tubule2 10 of 4 0.00Down
Larval hindgut23 43 of 4 0.16Down
Larval fat body652 584 of 4 4.30Up
Larval trachea34 64 of 4 0.23Down
Larval carcass8 20 of 4 0.06Down
S2 cells (growing)1 00 of 4 0.01Down
Whole fly150 104 of 4



CG15092 (CG42351):

Annotation Number : CG15092
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259682
Gbrowse : chr2R:14645802-14648577 (-) // 100.0 //
Probeset : 1633076_at
Accessions : protein= NP_001137703; /// NP_001137704; /// NP_001137705; /// NP_611371;, nucleotide= NM_001144231; /// NM_001144232; /// NM_001144233; /// NM_137527;
Pathway : 0005811 // lipid particle // inferred from direct assay
FlyMine data for FBgn0259682.
TRiP has 1 RNAi stocks for FBgn0259682 available for purchase.
VDRC has 3 RNAi stocks for FBgn0259682 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain63 34 of 4 0.10Down
Head482 74 of 4 0.50Down
Eye235 344 of 4 0.23Down
Thoracicoabdominal ganglion104 44 of 4 0.10Down
Salivary gland24 41 of 4 0.02Down
Crop464 314 of 4 0.50Down
Midgut24 30 of 4 0.00Down
Tubule49 251 of 4 0.00Down
Hindgut158 64 of 4 0.20Down
Heart879 604 of 4 0.86None
Fat body1468 3744 of 4 1.43None
Ovary1709 364 of 4 1.70Up
Testis45 44 of 4 0.00Down
Male accessory glands24 32 of 4 0.00Down
Virgin spermatheca504 424 of 4 0.49Down
Mated spermatheca893 734 of 4 0.87None
Adult carcass727 274 of 4 0.70Down
Larval CNS36 34 of 4 0.04Down
Larval Salivary gland69 54 of 4 0.07Down
Larval midgut25 30 of 4 0.03Down
Larval tubule31 23 of 4 0.00Down
Larval hindgut41 54 of 4 0.04Down
Larval fat body1426 1274 of 4 1.40Up
Larval trachea120 274 of 4 0.12Down
Larval carcass34 32 of 4 0.03Down
S2 cells (growing)23 21 of 4 0.02Down
Whole fly1024 674 of 4

Looking for FBgn0259682. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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