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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0259697 through 18771 annotations produced 1 hits



CG40050 (nvd):

Annotation Number : CG40050
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259697
Gbrowse : chr3L:24317966-24341830 (+) // 100.0 //
Probeset : 1624634_at
Accessions : protein= NP_001097670;, nucleotide= NM_001104200;
Interpro : "0016491 // oxidoreductase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred
FlyMine data for FBgn0259697.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.20None
Head2 ± 00 of 4 0.60None
Eye4 ± 00 of 4 1.07None
Thoracicoabdominal ganglion1 ± 00 of 4 0.30None
Salivary gland8 ± 20 of 4 1.98None
Crop2 ± 10 of 4 0.50None
Midgut1 ± 00 of 4 0.30None
Tubule3 ± 00 of 4 0.80None
Hindgut2 ± 00 of 4 0.70None
Heart0 ± 00 of 4 0.13None
Fat body3 ± 10 of 4 0.92None
Ovary6 ± 11 of 4 1.60None
Testis6 ± 12 of 4 1.60None
Male accessory glands2 ± 00 of 4 0.50None
Virgin spermatheca1 ± 00 of 4 0.28None
Mated spermatheca1 ± 00 of 4 0.45None
Adult carcass2 ± 10 of 4 0.50None
Larval CNS8 ± 33 of 4 2.06None
Larval Salivary gland1 ± 00 of 4 0.33None
Larval midgut4 ± 10 of 4 1.13None
Larval tubule10 ± 03 of 4 2.60Up
Larval hindgut2 ± 10 of 4 0.60None
Larval fat body7 ± 10 of 4 1.70None
Larval trachea2 ± 31 of 4 0.51None
Larval carcass1 ± 00 of 4 0.36None
S2 cells (growing)0 ± 00 of 4 0.11None
Whole fly4 ± 11 of 4

Looking for FBgn0259697. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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