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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0259707 through 18771 annotations produced 1 hits



(CG42361):

Annotation Number : CG3579
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259707
Gbrowse : chr2R:20494888-20496055 (+) // 100.0 //
Probeset : 1628381_at
Accessions : protein= NP_611945;, nucleotide= NM_138101;
FlyMine data for FBgn0259707.
VDRC has 3 RNAi stocks for FBgn0259707 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain351 ± 144 of 431.90Up
Head131 ± 104 of 411.90Up
Eye313 ± 114 of 428.45Up
Thoracicoabdominal ganglion300 ± 54 of 427.20Up
Salivary gland5 ± 10 of 4 0.49None
Crop4 ± 10 of 4 0.40Down
Midgut1 ± 00 of 4 0.20Down
Tubule2 ± 00 of 4 0.20Down
Hindgut4 ± 10 of 4 0.40Down
Heart2 ± 10 of 4 0.26Down
Fat body1 ± 00 of 4 0.17Down
Ovary2 ± 00 of 4 0.20Down
Testis6 ± 20 of 4 0.60None
Male accessory glands2 ± 00 of 4 0.20Down
Virgin spermatheca0 ± 00 of 4 0.07Down
Mated spermatheca1 ± 00 of 4 0.11Down
Adult carcass9 ± 40 of 4 0.90None
Larval CNS167 ± 124 of 415.17Up
Larval Salivary gland1 ± 00 of 4 0.17Down
Larval midgut1 ± 00 of 4 0.09Down
Larval tubule3 ± 10 of 4 0.30Down
Larval hindgut2 ± 00 of 4 0.25Down
Larval fat body1 ± 00 of 4 0.10Down
Larval trachea7 ± 71 of 4 0.66None
Larval carcass2 ± 00 of 4 0.22Down
S2 cells (growing)2 ± 00 of 4 0.20Down
Whole fly11 ± 10 of 4

Looking for FBgn0259707. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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