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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0259711 through 18771 annotations produced 1 hits



(CG42365):

Annotation Number : CG15675
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259711
Gbrowse : chr2R:17552018-17555099 (+) // 100.0 //
Probeset : 1632958_a_at
Accessions : protein= NP_726099;, nucleotide= NM_166469;
FlyMine data for FBgn0259711.
VDRC has 1 RNAi stocks for FBgn0259711 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain67 ± 44 of 4 0.90None
Head56 ± 34 of 4 0.80Down
Eye27 ± 24 of 4 0.37Down
Thoracicoabdominal ganglion80 ± 34 of 4 1.10None
Salivary gland95 ± 93 of 4 1.31None
Crop91 ± 44 of 4 1.30Up
Midgut108 ± 24 of 4 1.50Up
Tubule88 ± 24 of 4 1.20Up
Hindgut47 ± 22 of 4 0.70Down
Heart49 ± 64 of 4 0.68Down
Fat body46 ± 73 of 4 0.65Down
Ovary135 ± 24 of 4 1.90Up
Testis79 ± 44 of 4 1.10None
Male accessory glands42 ± 71 of 4 0.60Down
Virgin spermatheca43 ± 30 of 4 0.60Down
Mated spermatheca50 ± 21 of 4 0.70Down
Adult carcass71 ± 63 of 4 1.00None
Larval CNS49 ± 34 of 4 0.69Down
Larval Salivary gland71 ± 64 of 4 0.98None
Larval midgut121 ± 34 of 4 1.67Up
Larval tubule172 ± 214 of 4 2.40Up
Larval hindgut78 ± 04 of 4 1.07None
Larval fat body78 ± 31 of 4 1.10None
Larval trachea78 ± 24 of 4 1.08None
Larval carcass78 ± 44 of 4 1.08None
S2 cells (growing)124 ± 34 of 4 1.71Up
Whole fly72 ± 24 of 4

Looking for FBgn0259711. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime