FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0259712 through 18771 annotations produced 2 hits

(CG42366):

Annotation Number : CG31711
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259712
Gbrowse : chr2L:9926612-9929149 (+) // 100.0 //
Probeset : 1640664_at
Accessions : protein= NP_723501;, nucleotide= NM_164876;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred
FlyMine data for FBgn0259712.
Homophila reports that CG31711 is a close match (7e-11) to human gene BDB;BDB1;NTRKR2;ROR2 (NP_004551), a gene associated with Brachydactyly, type B1, 113000 (3);Robinow syndrome, autosomal recessive, 268310 (3).
TRiP has 3 RNAi stocks for FBgn0259712 available for purchase.
VDRC has 4 RNAi stocks for FBgn0259712 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	2 ± 0	0 of 4	1.90	None
Head	4 ± 0	0 of 4	3.30	Up
Eye	2 ± 1	0 of 4	2.14	None
Thoracicoabdominal ganglion	0 ± 0	0 of 4	0.80	None
Salivary gland	11 ± 3	0 of 4	8.94	None
Crop	3 ± 2	0 of 4	2.50	None
Midgut	4 ± 1	0 of 4	3.70	None
Tubule	2 ± 0	0 of 4	2.00	None
Hindgut	0 ± 0	0 of 4	0.70	None
Heart	3 ± 1	0 of 4	3.24	None
Fat body	1 ± 0	0 of 4	1.45	None
Ovary	1 ± 0	0 of 4	1.50	None
Testis	2 ± 0	0 of 4	2.10	None
Male accessory glands	2 ± 1	0 of 4	2.30	None
Virgin spermatheca	5 ± 1	0 of 4	4.80	None
Mated spermatheca	3 ± 1	0 of 4	2.84	None
Adult carcass	2 ± 0	0 of 4	1.70	None
Larval CNS	1 ± 0	0 of 4	0.82	None
Larval Salivary gland	4 ± 1	0 of 4	3.98	None
Larval midgut	10 ± 1	0 of 4	8.16	Up
Larval tubule	1 ± 0	0 of 4	1.00	None
Larval hindgut	4 ± 1	0 of 4	3.78	None
Larval fat body	10 ± 3	0 of 4	8.70	None
Larval trachea	3 ± 1	0 of 4	3.20	None
Larval carcass	3 ± 1	0 of 4	3.00	None
S2 cells (growing)	6 ± 0	0 of 4	5.08	Up
Whole fly	1 ± 0	0 of 4

():

Annotation Number : CG31878
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259712
Gbrowse : chr2L:9929804-9930999 (+) // 100.0 //
Probeset : 1627503_at
Accessions : protein= NP_723501;, nucleotide= NM_164876;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred
FlyMine data for FBgn0259712.
TRiP has 3 RNAi stocks for FBgn0259712 available for purchase.
VDRC has 4 RNAi stocks for FBgn0259712 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	4 ± 1	0 of 4	0.70	None
Head	12 ± 2	0 of 4	2.10	None
Eye	9 ± 0	1 of 4	1.54	Up
Thoracicoabdominal ganglion	3 ± 1	0 of 4	0.50	None
Salivary gland	10 ± 3	0 of 4	1.85	None
Crop	2 ± 1	0 of 4	0.50	None
Midgut	6 ± 1	0 of 4	1.10	None
Tubule	4 ± 0	0 of 4	0.70	Down
Hindgut	5 ± 2	0 of 4	0.90	None
Heart	2 ± 0	0 of 4	0.49	Down
Fat body	7 ± 4	0 of 4	1.35	None
Ovary	1 ± 0	0 of 4	0.30	Down
Testis	4 ± 1	0 of 4	0.80	None
Male accessory glands	1 ± 0	0 of 4	0.20	Down
Virgin spermatheca	3 ± 1	0 of 4	0.54	None
Mated spermatheca	3 ± 1	0 of 4	0.59	None
Adult carcass	3 ± 1	0 of 4	0.60	None
Larval CNS	4 ± 3	0 of 4	0.77	None
Larval Salivary gland	3 ± 2	0 of 4	0.62	None
Larval midgut	7 ± 0	0 of 4	1.34	None
Larval tubule	4 ± 1	0 of 4	0.70	None
Larval hindgut	5 ± 1	2 of 4	0.91	None
Larval fat body	8 ± 3	0 of 4	1.50	None
Larval trachea	3 ± 2	0 of 4	0.67	None
Larval carcass	10 ± 1	1 of 4	1.82	Up
S2 cells (growing)	3 ± 1	0 of 4	0.63	None
Whole fly	5 ± 0	0 of 4

Looking for FBgn0259712. 2 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720