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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0259715 through 18771 annotations produced 1 hits



(CG42369):

Annotation Number : CG9511
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259715
Gbrowse : chr2L:6395852-6397249 (-) // 100.0 //
Probeset : 1631604_at
Accessions : protein= NP_609024;, nucleotide= NM_135180;
FlyMine data for FBgn0259715.
BioGrid reports that CG9511 interacts with CG9755 .
VDRC has 2 RNAi stocks for FBgn0259715 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain72 ± 34 of 4 0.20Down
Head1322 ± 1424 of 4 4.00Up
Eye632 ± 1084 of 4 1.92None
Thoracicoabdominal ganglion51 ± 44 of 4 0.20Down
Salivary gland14 ± 40 of 4 0.04Down
Crop38 ± 84 of 4 0.10Down
Midgut8 ± 10 of 4 0.00Down
Tubule32 ± 72 of 4 0.10Down
Hindgut134 ± 84 of 4 0.40Down
Heart1844 ± 1764 of 4 5.59Up
Fat body2368 ± 1744 of 4 7.18Up
Ovary0 ± 00 of 4 0.00Down
Testis11 ± 12 of 4 0.00Down
Male accessory glands6 ± 30 of 4 0.00Down
Virgin spermatheca1664 ± 414 of 4 5.05Up
Mated spermatheca1269 ± 1204 of 4 3.85Up
Adult carcass1556 ± 1504 of 4 4.70Up
Larval CNS1 ± 00 of 4 0.00Down
Larval Salivary gland19 ± 53 of 4 0.06Down
Larval midgut9 ± 20 of 4 0.03Down
Larval tubule4 ± 10 of 4 0.00Down
Larval hindgut45 ± 74 of 4 0.14Down
Larval fat body83 ± 114 of 4 0.30Down
Larval trachea51 ± 174 of 4 0.16Down
Larval carcass66 ± 24 of 4 0.20Down
S2 cells (growing)38 ± 14 of 4 0.12Down
Whole fly329 ± 364 of 4

Looking for FBgn0259715. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime