Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

 University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0259729 through 18771 annotations produced 1 hits


eyes closed (CG42383):

Annotation Number : CG4556
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259729
Gbrowse : chr2R:20311448-20312625 (-) // 100.0 //
Probeset : 1627997_at
Accessions : protein= NP_523847;, nucleotide= NM_079123;
FlyMine data for FBgn0259729.
VDRC has 2 RNAi stocks for FBgn0259729 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.00Down
Head0 ± 00 of 4 0.00Down
Eye1 ± 00 of 4 0.03Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.00Down
Salivary gland7 ± 30 of 4 0.12Down
Crop1 ± 00 of 4 0.00Down
Midgut1 ± 00 of 4 0.00Down
Tubule1 ± 00 of 4 0.00Down
Hindgut0 ± 00 of 4 0.00Down
Heart0 ± 00 of 4 0.01Down
Fat body0 ± 00 of 4 0.01Down
Ovary0 ± 00 of 4 0.00Down
Testis862 ± 344 of 413.60Up
Male accessory glands1 ± 00 of 4 0.00Down
Virgin spermatheca2 ± 00 of 4 0.03Down
Mated spermatheca1 ± 00 of 4 0.02Down
Adult carcass1 ± 00 of 4 0.00Down
Larval CNS1 ± 00 of 4 0.02Down
Larval Salivary gland2 ± 10 of 4 0.03Down
Larval midgut1 ± 00 of 4 0.02Down
Larval tubule0 ± 00 of 4 0.00Down
Larval hindgut0 ± 00 of 4 0.01Down
Larval fat body39 ± 251 of 4 0.60None
Larval trachea3 ± 30 of 4 0.05Down
Larval carcass0 ± 00 of 4 0.01Down
S2 cells (growing)0 ± 00 of 4 0.01Down
Whole fly63 ± 14 of 4

Looking for FBgn0259729. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime