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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0259731 through 18771 annotations produced 1 hits



CG42384 /// CG42385 /// CG42386 /// CG42387 (tal-1A /// tal-2A /// tal-3A /// tal-AA):

Annotation Number : LD11162
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259730 /// FBgn0259731 /// FBgn0259732 /// FBgn0259733
Gbrowse : chr3R:9638840-9640372 (+) // 100.0 //
Probeset : 1625897_s_at
Accessions : protein= NP_001138049; /// NP_001138050; /// NP_001138051; /// NP_001138052;, nucleotide= NM_001144577; /// NM_001144578; /// NM_001144579; /// NM_001144580;
FlyMine data for FBgn0259730 /// FBgn0259731 /// FBgn0259732 /// FBgn0259733.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain926 ± 694 of 4 3.40Up
Head469 ± 574 of 4 1.70None
Eye116 ± 74 of 4 0.42None
Thoracicoabdominal ganglion1221 ± 394 of 4 4.40Up
Salivary gland3957 ± 2544 of 414.40Up
Crop307 ± 264 of 4 1.10None
Midgut76 ± 74 of 4 0.30Down
Tubule236 ± 824 of 4 0.90None
Hindgut206 ± 134 of 4 0.70None
Heart343 ± 244 of 4 1.25None
Fat body352 ± 834 of 4 1.28None
Ovary152 ± 334 of 4 0.60None
Testis64 ± 34 of 4 0.20Down
Male accessory glands12 ± 22 of 4 0.00Down
Virgin spermatheca22 ± 14 of 4 0.08Down
Mated spermatheca34 ± 14 of 4 0.12Down
Adult carcass231 ± 154 of 4 0.80None
Larval CNS310 ± 294 of 4 1.13None
Larval Salivary gland224 ± 314 of 4 0.82None
Larval midgut69 ± 104 of 4 0.25Down
Larval tubule278 ± 184 of 4 1.00None
Larval hindgut68 ± 54 of 4 0.25Down
Larval fat body2455 ± 2944 of 4 8.90Up
Larval trachea129 ± 324 of 4 0.47None
Larval carcass1014 ± 1394 of 4 3.69Up
S2 cells (growing)2 ± 10 of 4 0.01Down
Whole fly274 ± 564 of 4

Looking for FBgn0259731. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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