FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0259734 through 18771 annotations produced 3 hits

(CG42388):

Annotation Number : CG15364
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259734
Gbrowse : chrX:8934102-8934445 (+) // 97.72 //
Probeset : 1637594_at
Accessions : protein= NP_001162711; /// NP_001162712;, nucleotide= NM_001169240; /// NM_001169241;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0259734.
BioGrid reports that CG15364 interacts with CG17836 CG7873 .
TRiP has 1 RNAi stocks for FBgn0259734 available for purchase.
VDRC has 8 RNAi stocks for FBgn0259734 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	0 ± 0	0 of 4	0.40	None
Head	3 ± 0	0 of 4	1.90	None
Eye	7 ± 1	1 of 4	4.04	Up
Thoracicoabdominal ganglion	1 ± 0	0 of 4	0.90	None
Salivary gland	14 ± 5	1 of 4	7.88	None
Crop	5 ± 2	1 of 4	3.00	None
Midgut	3 ± 0	0 of 4	2.10	None
Tubule	4 ± 0	0 of 4	2.50	Up
Hindgut	6 ± 1	1 of 4	3.60	Up
Heart	4 ± 0	1 of 4	2.57	None
Fat body	1 ± 1	0 of 4	0.99	None
Ovary	1 ± 0	0 of 4	0.70	None
Testis	1 ± 0	0 of 4	0.80	None
Male accessory glands	8 ± 1	1 of 4	4.50	Up
Virgin spermatheca	0 ± 0	0 of 4	0.49	None
Mated spermatheca	1 ± 0	0 of 4	0.71	None
Adult carcass	7 ± 2	0 of 4	4.20	None
Larval CNS	1 ± 1	0 of 4	0.71	None
Larval Salivary gland	6 ± 1	0 of 4	3.36	None
Larval midgut	2 ± 0	0 of 4	1.14	None
Larval tubule	7 ± 1	0 of 4	4.30	Up
Larval hindgut	4 ± 1	1 of 4	2.21	None
Larval fat body	0 ± 0	0 of 4	0.40	None
Larval trachea	8 ± 2	2 of 4	4.58	Up
Larval carcass	1 ± 0	0 of 4	0.62	None
S2 cells (growing)	1 ± 0	0 of 4	0.96	None
Whole fly	1 ± 0	0 of 4

(CG42388):

Annotation Number : CG33224
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259734
Gbrowse : chrX:8943291-8944980 (+) // 100.0 //
Probeset : 1628695_at
Accessions : protein= NP_001162711; /// NP_001162712;, nucleotide= NM_001169240; /// NM_001169241;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0259734.
TRiP has 1 RNAi stocks for FBgn0259734 available for purchase.
VDRC has 8 RNAi stocks for FBgn0259734 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	1 ± 0	0 of 4	0.10	Down
Head	3 ± 1	0 of 4	0.40	Down
Eye	4 ± 0	0 of 4	0.47	Down
Thoracicoabdominal ganglion	3 ± 1	0 of 4	0.40	Down
Salivary gland	3 ± 1	0 of 4	0.43	None
Crop	3 ± 2	0 of 4	0.40	None
Midgut	1 ± 0	0 of 4	0.20	Down
Tubule	3 ± 0	0 of 4	0.40	Down
Hindgut	1 ± 0	0 of 4	0.20	Down
Heart	1 ± 0	0 of 4	0.12	Down
Fat body	1 ± 0	0 of 4	0.16	Down
Ovary	14 ± 0	4 of 4	1.70	Up
Testis	1 ± 0	0 of 4	0.20	Down
Male accessory glands	1 ± 0	0 of 4	0.20	Down
Virgin spermatheca	3 ± 1	0 of 4	0.37	Down
Mated spermatheca	2 ± 0	0 of 4	0.23	Down
Adult carcass	9 ± 3	0 of 4	1.10	None
Larval CNS	1 ± 0	0 of 4	0.15	Down
Larval Salivary gland	2 ± 0	0 of 4	0.27	Down
Larval midgut	1 ± 0	0 of 4	0.14	Down
Larval tubule	3 ± 1	0 of 4	0.40	Down
Larval hindgut	1 ± 0	0 of 4	0.11	Down
Larval fat body	4 ± 1	0 of 4	0.50	None
Larval trachea	1 ± 0	0 of 4	0.15	Down
Larval carcass	1 ± 0	0 of 4	0.13	Down
S2 cells (growing)	2 ± 1	0 of 4	0.26	Down
Whole fly	8 ± 1	1 of 4

(CG42388):

Annotation Number : CG4040
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259734
Gbrowse : chrX:8945127-8947359 (+) // 99.5 //
Probeset : 1627173_at
Accessions : protein= NP_001162711; /// NP_001162712;, nucleotide= NM_001169240; /// NM_001169241;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0259734.
BioGrid reports that CG4040 interacts with CG6950 .
TRiP has 1 RNAi stocks for FBgn0259734 available for purchase.
VDRC has 8 RNAi stocks for FBgn0259734 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	8 ± 1	0 of 4	0.20	Down
Head	19 ± 3	4 of 4	0.60	Down
Eye	110 ± 6	4 of 4	3.43	Up
Thoracicoabdominal ganglion	11 ± 2	1 of 4	0.40	Down
Salivary gland	58 ± 12	1 of 4	1.82	None
Crop	76 ± 4	4 of 4	2.40	Up
Midgut	30 ± 1	4 of 4	0.90	None
Tubule	73 ± 4	4 of 4	2.30	Up
Hindgut	67 ± 5	4 of 4	2.10	Up
Heart	51 ± 4	4 of 4	1.60	Up
Fat body	9 ± 3	0 of 4	0.30	Down
Ovary	75 ± 5	4 of 4	2.30	Up
Testis	10 ± 1	0 of 4	0.30	Down
Male accessory glands	18 ± 3	1 of 4	0.60	Down
Virgin spermatheca	20 ± 2	0 of 4	0.63	Down
Mated spermatheca	28 ± 2	3 of 4	0.87	None
Adult carcass	21 ± 5	1 of 4	0.70	None
Larval CNS	6 ± 3	0 of 4	0.20	Down
Larval Salivary gland	42 ± 5	3 of 4	1.32	None
Larval midgut	38 ± 3	4 of 4	1.20	None
Larval tubule	49 ± 1	4 of 4	1.50	Up
Larval hindgut	36 ± 4	4 of 4	1.14	None
Larval fat body	11 ± 3	0 of 4	0.30	Down
Larval trachea	67 ± 7	4 of 4	2.09	Up
Larval carcass	40 ± 4	4 of 4	1.25	None
S2 cells (growing)	9 ± 1	0 of 4	0.29	Down
Whole fly	32 ± 2	4 of 4

Looking for FBgn0259734. 3 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720