FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0259735 through 18771 annotations produced 2 hits

CG13260 (CG42389):

Annotation Number : CG31738
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259735
Gbrowse : chr2L:16622043-16662017 (+) // 99.83 //
Probeset : 1625230_a_at
Accessions : protein= NP_001137829; /// NP_609798; /// NP_609801; /// NP_723981;, nucleotide= NM_001144357; /// NM_135954; /// NM_135957; /// NM_135957; /// NM_165168; /// NM_165168;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0259735.
Homophila reports that CG31738 is a close match (8e-11) to human gene CAML1;HSAS1;L1CAM (NP_076493), a gene associated with Corpus callosum, partial agenesis of, 304100 (3);CRASH syndrome, 303350 (3);Hydrocephalus due to aqueductal stenosis, 307000 (3);Hydrocephalus with congenital idiopathic intestinal pseudoobstruction, 307000 (3);Hydrocephalus with Hirschsprung disease and cleft palate, 142623 (3);MASA syndrome, 303350 (3).
BioGrid reports that CG31738 interacts with CG8483 CG8206 .
VDRC has 7 RNAi stocks for FBgn0259735 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	139 ± 3	4 of 4	2.50	Up
Head	54 ± 2	4 of 4	1.00	None
Eye	251 ± 17	4 of 4	4.59	Up
Thoracicoabdominal ganglion	146 ± 11	4 of 4	2.70	Up
Salivary gland	88 ± 25	4 of 4	1.61	None
Crop	54 ± 1	4 of 4	1.00	None
Midgut	97 ± 4	4 of 4	1.80	Up
Tubule	44 ± 2	4 of 4	0.80	Down
Hindgut	53 ± 3	4 of 4	1.00	None
Heart	235 ± 18	4 of 4	4.30	Up
Fat body	55 ± 7	4 of 4	1.02	None
Ovary	86 ± 6	4 of 4	1.60	Up
Testis	41 ± 4	4 of 4	0.70	None
Male accessory glands	266 ± 16	4 of 4	4.80	Up
Virgin spermatheca	51 ± 3	4 of 4	0.94	None
Mated spermatheca	77 ± 10	4 of 4	1.42	None
Adult carcass	51 ± 8	4 of 4	0.90	None
Larval CNS	71 ± 4	4 of 4	1.30	None
Larval Salivary gland	141 ± 7	4 of 4	2.58	Up
Larval midgut	151 ± 8	4 of 4	2.76	Up
Larval tubule	68 ± 3	4 of 4	1.30	None
Larval hindgut	64 ± 1	4 of 4	1.17	None
Larval fat body	57 ± 2	4 of 4	1.10	None
Larval trachea	307 ± 24	4 of 4	5.60	Up
Larval carcass	54 ± 2	4 of 4	1.00	None
S2 cells (growing)	379 ± 12	4 of 4	6.92	Up
Whole fly	54 ± 5	4 of 4

CG13260 (CG42389):

Annotation Number : CG13260
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259735
Gbrowse : chr2L:16558128-16560051 (+) // 100.0 //
Probeset : 1637287_at
Accessions : protein= NP_001137829; /// NP_609798; /// NP_609801; /// NP_723981;, nucleotide= NM_001144357; /// NM_135954; /// NM_135957; /// NM_135957; /// NM_165168; /// NM_165168;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0259735.
VDRC has 7 RNAi stocks for FBgn0259735 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	12 ± 0	4 of 4	8.90	Up
Head	2 ± 1	0 of 4	1.70	None
Eye	3 ± 1	0 of 4	2.28	None
Thoracicoabdominal ganglion	4 ± 1	0 of 4	3.00	None
Salivary gland	7 ± 3	0 of 4	5.26	None
Crop	6 ± 3	0 of 4	4.20	None
Midgut	1 ± 0	0 of 4	0.90	None
Tubule	2 ± 0	0 of 4	1.40	Up
Hindgut	4 ± 1	0 of 4	3.00	None
Heart	4 ± 1	0 of 4	3.12	Up
Fat body	8 ± 4	1 of 4	6.05	Up
Ovary	2 ± 1	0 of 4	1.80	None
Testis	1 ± 0	0 of 4	0.80	None
Male accessory glands	1 ± 0	0 of 4	0.90	None
Virgin spermatheca	4 ± 2	0 of 4	3.12	None
Mated spermatheca	6 ± 3	1 of 4	4.21	None
Adult carcass	8 ± 1	0 of 4	5.50	Up
Larval CNS	3 ± 1	0 of 4	2.50	Up
Larval Salivary gland	2 ± 0	0 of 4	1.76	None
Larval midgut	4 ± 0	0 of 4	3.16	Up
Larval tubule	3 ± 1	0 of 4	2.50	None
Larval hindgut	1 ± 0	0 of 4	0.93	None
Larval fat body	0 ± 0	0 of 4	0.60	None
Larval trachea	2 ± 1	0 of 4	1.38	None
Larval carcass	2 ± 1	0 of 4	1.97	None
S2 cells (growing)	2 ± 0	0 of 4	1.50	None
Whole fly	1 ± 0	0 of 4

Looking for FBgn0259735. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720